Gadus morhua (Atlantic cod): 115549165
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Entry
115549165 CDS
T10832
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03013
Nucleocytoplasmic transport
gmh03015
mRNA surveillance pathway
gmh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115549165
09122 Translation
03013 Nucleocytoplasmic transport
115549165
03015 mRNA surveillance pathway
115549165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115549165
03041 Spliceosome [BR:
gmh03041
]
115549165
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
115549165
Spliceosome [BR:
gmh03041
]
Complex C
Other components
EJC/TREX
115549165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
HeH
Motif
Other DBs
NCBI-GeneID:
115549165
NCBI-ProteinID:
XP_030220051
Ensembl:
ENSGMOG00000025886
LinkDB
All DBs
Position
8:complement(14281057..14296827)
Genome browser
AA seq
1730 aa
AA seq
DB search
MADLEDVTLDGRPLNSLRVADLKAALEERGLSKSGPKNALVKRLKGALMLENLQRTSTPH
SGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAGDPEEPEENTSVNNSAPCP
APSQEAAPVPVEHHKPLGPADGEGLAGPAHQEANMSGQPAGPVPSAVSTHSAAAERAPPS
GQAAVDSDDDDSDDGDDDDADEEAWGERRRGPGEPTRRTAARRSAARERSEASRQPPQHI
PSLLSPQLRQPTPPPSPPPELSYPLPDTPKQSPPSPDEAPARQRASSSSSSGSSSSRSSS
PEPQSRERKPPGPLTLLARKMASEGAFSGAGWHGAAGEPTDNGAAAAAALAQPFTAITHT
ANTAAAIASVSFPMIPGGMQGVHGGLGSQGPVGVLRATAADDREVLLEREKALEMERRER
QRMVEEEQEREKALERERIERQRALQREEQERALQRERELALERERQERDLALERERLER
ELALAKEREERERALQLEKLELERAARREREERERALQREREERERAQELAREREEKERI
ERERFVEQQRLEREQALAREREEMERLARERALEQERLQRERALEQERLLREKEEAERME
RQNALEQQRMEREKAQEQQRMEREKALEQQRVEREKALEQQRMEREKAQEQQRMEKEKAQ
EREEKERAEREAARERERMEKAELERKRAEEQERVERERAETLQRERALEKEREEKERAL
KQEREREEKERVLKKEREERALKEQNEREERERALKKEREERALKEEKEREEKERVQKKE
REEREERDRVLKKEREEKERVLKKEREEEESALNKKQEEKEREEKKNTLEHERREKEAQE
QRDKAKMADRERESHLPPSKRGRDIGLNLLTTPPQISVGAASKVDQPESQAPGGTGPGEH
SEPATPLSPQSSVKKFRFLRDTPAQPPAASSGSVAIKRPRTFSDTPPPQGSPITSPTKAR
PWADKEGPALPPAAPVDGPKPESADRPPVAQEPPKKEAEQDRAPSVPKVAALQGEGEKEK
PKRQRKRSSSSDSSSSDSGSSSSGSSSSSSSSRGKSQEKKAQRKASPKRRADGGPQANET
TRASLTKAEGGGSGVKLHSEKTVVGPPAEDQKTPAATKEEEKSEQKKDKPRVLKESSMAE
AELVQETNDETPKAFSARRISLSSSKVSPGPTSADGDGDSGAARKRRWGSSTAVTAKKPS
ISITTESLKSLIPDMKPGAGQDAVVDLHPEEAVLSGAEEEMEEEEREQPDQDLQIRRTVT
QVRDPGFQSGTRPVVPLESQENGQKEAKRSRREETQEKEVQKGGKDRTKTPEEKTDVSIS
GIMETQSPTHTSPDVEMNTVTPSGDAPVRRSISQQRSGVTITIDDPVRSARQPSPPRSKV
SSIVHVSNLVRPFTLGQLKELLGRTGTLLDTGFWIDKIKSHCYVTYSSPDEAVATRTALH
GVKWPQSNPKVLSVEFCQQDELEFHKNLGAGVKPGAEDQASAPGRQWPPSGPPSLLPERE
QWAEREREMARREQARTEREWDRDKVREFGPAGEEKAAGPRRSRSRERKRKERGKSKERK
NDKKAEKAAEDPPAKLLDDLFQKTKAAPCIYWLPLTEETFALREAANAERAKERERNRKE
QDEEEEKKRKEEEQQRKERVKAGSGPPAERAPRGEGDKDRDGERERERDRGRDRGERDGN
KRREASRRPGAGGSAGGGGGGGSSGGGGGSSNAGRGRRSHSRSNPRERRR
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccttgaagacgttacgctggacgggagaccgctaaactctcttcgggtggcg
gacttaaaagctgctctcgaggaacgaggactctctaaaagtggaccgaaaaatgcactc
gtcaaaagactcaaaggggccctcatgctggagaacctccagcgcacctccacccctcac
agtggactgcagcccaactcccagatcggggaggagatgagccagaacagcttcatcaag
cagtacctcgccaagcagcaagagctcctccgacagcgccttgagagggaggccagggaa
gctggggaccccgaagaacccgaagaaaacacaagcgtcaacaacagcgctccgtgtcct
gctccctcccaggaggcagcgccagtgcccgtcgaacaccacaagcccctcggccccgcg
gacggcgaggggctggcgggccccgcccaccaggaggcgaacatgtctggtcagcccgcc
ggccccgtccccagcgccgtgtccacgcacagcgccgccgcggagcgcgcccccccgtct
gggcaggccgcggtcgacagcgacgacgacgacagtgacgacggcgacgacgacgacgcg
gacgaagaggcgtggggcgagcggaggcggggccccggggagcccaccaggaggacggcg
gcacggaggtcggcggccagagagcgctcggaggcgtcccgccagccgcctcagcacatc
ccctccctcctctccccgcagctccgccagcccacgccgccgccctcccctcccccggag
ctgtcctacccgctgcccgacacccccaaacaaagccccccgagcccggatgaggccccc
gcccgccagcgcgcctccagcagctccagctccgggtcgtccagcagccgcagcagcagc
ccggagccccagagcagagagcggaagccccccgggcccctcaccctgctggcccgcaaa
atggcgtccgagggggccttctcgggcgccgggtggcacggtgccgccggagagcccacg
gacaacggtgccgccgccgccgcagcattagcccaacccttcaccgccatcacacacacg
gccaacactgcggccgccatcgccagcgtctcctttcccatgatccccggcggcatgcag
ggggtacacggaggcctcggcagccagggcccagtgggcgtgctccgcgccacggcggcg
gacgacagggaggtgctgctggagagggagaaggccctggagatggagagacgagagagg
cagaggatggtggaggaagagcaggagagggagaaggcgttggagcgggagaggatagag
cgacagagggccttgcagcgggaggagcaggagagggccctgcagagggagcgggagctg
gccctggagcgggagagacaggagagggatcttgctctggagcgcgagagactggagaga
gagttggccctcgccaaagagagggaggaacgagagagggcccttcaactggagaagctg
gagctggagcgggctgctcggcgggaaagagaggagagagagagggctttgcagagggaa
agagaggagagggaaagggctcaggagctcgctagggagagggaagagaaggagaggatc
gagagggagagatttgtggaacaacagcggttagagagagagcaggccctggcccgggag
agggaagagatggagaggctggcgagagaacgagccttggagcaggagagactacagagg
gagcgagcgctggagcaggagcgtctgctacgagagaaggaggaagcagagaggatggag
agacagaatgctctagagcagcaacggatggagagagagaaggcacaggagcagcaacgg
atggagagagagaaggccctggagcagcaacgggtggagagagagaaggccctggagcag
caacggatggagagagagaaggcacaggagcagcaacggatggagaaagagaaagcacag
gagcgggaggagaaggagagggcagagagagaggcagcacgcgaacgagagaggatggag
aaggcagagctggagaggaaacgcgcagaagagcaggagagggtggagcgagagagagcc
gagacactccagagggagagagccctggagaaggagcgtgaggagaaggaaagggcccta
aagcaagagagggagagggaggagaaggagagagtgcttaagaaagagcgggaggagagg
gccctcaaggaacagaatgagagggaggagagggaaagggcgcttaagaaagagagggag
gagagggctctcaaggaagagaaggagagggaggagaaggagagagtgcaaaagaaagag
agggaggagagggaagagagggacagagtcctaaagaaggagagagaggagaaggagagg
gtcctaaagaaagagagggaggaggaggagagtgcgctgaacaagaagcaagaggagaag
gagagggaggagaaaaaaaataccctggaacatgaaagacgggagaaggaggcgcaggag
cagcgagacaaggctaagatggccgacagggagagggaaagtcacctccctccatccaag
cgcggccgggacattggtctgaacctcctgaccactccgccgcagatctccgtgggagca
gccagcaaggtggaccagcccgagtcccaggcgcccggtggaactggcccaggggagcat
tcagaaccagccacccctctgtcgccccagtcctccgtcaagaagttccgcttcctgcgg
gacactccggcacagcccccggccgcgtcctccggctccgtggccataaagcggccccgc
accttctcagacaccccgccgccccagggctcccccatcacctccccgaccaaggcgcgg
ccctgggccgacaaagaagggcccgccctcccgccagcggccccagtggacgggccaaag
ccagagtctgcagaccgacccccagttgcccaagagccccccaagaaagaggcggagcaa
gacagggccccctccgtcccgaaggtggcagccctgcagggagaaggggagaaggagaaa
cccaaacgccagaggaagaggtcctcctccagcgactcctcctcttcggactctgggtcg
tcctcgtctgggtcctccagctcgtcttcgtcatcgcggggaaagagtcaggagaagaag
gcccagcgcaaggcgtctcctaagcgcagggcggatggtggtcctcaagccaatgaaacg
actagagcctccctcaccaaagcagaagggggcgggtctggtgtcaagctgcacagcgag
aaaactgtggttggaccacctgccgaggaccagaagaccccagcagcgacaaaggaggaa
gagaaatcagagcagaagaaagacaagccaagggtcctgaaggagagtagcatggcggag
gctgagcttgtccaagagaccaacgatgagactcccaaggccttctctgcccggaggatc
tccctcagcagcagcaaggtgtcccctgggcccacgtcagccgacggcgatggagactct
ggagccgcgcgcaagaggaggtggggctccagcacagcggtcacggccaagaagccctcc
atcagcatcaccacggagtccctcaagtctctgatcccggacatgaagcccggggctggg
caggatgcggtggtggacctccacccagaggaagctgtcctctccggggccgaggaggag
atggaggaggaggagagggagcagcccgaccaggacctccagatccgacgcaccgtcact
caggttcgagatccaggctttcagagcggaacccggccggttgtcccgctggagagccag
gagaacgggcagaaggaggcgaagaggagtcgacgggaggagacccaggagaaggaggtc
cagaagggaggcaaggaccggacgaaaaccccagaggagaagacggacgtctccatctct
ggcatcatggagactcagtcgccaacgcacaccagccctgatgtggaaatgaacactgtg
acccccagcggcgacgccccggtccgccgctccatcagccagcagaggtcaggggtcacc
atcaccatcgacgaccccgtgcggtcggcccgccagccttcaccgccgcgcagcaaggtg
tccagcatcgtgcacgtatccaatctggtaaggcccttcaccctgggccagctgaaggag
ctgctgggccggacagggaccctgctggacacgggcttctggatcgacaagatcaagtct
cactgctacgtcacctactccagcccagacgaggcggtggccaccaggacagccctgcac
ggggtcaagtggcctcagagcaaccccaaggtcctcagcgtggagttctgccagcaggac
gagctggagttccacaagaacctgggggcgggcgtgaagcccggcgccgaggaccaggcg
tccgcgccgggccgccagtggccgccctccggcccgccctcgctgctgccggagcgcgag
cagtgggcggagcgcgagcgggagatggctcggcgggagcaggcgcgcacggagcgcgag
tgggaccgcgacaaggtgcgggagttcggccccgccggcgaggagaaggccgccgggccg
cggcgctcgcgctccagggagcggaaacgcaaggagcgggggaagagcaaggagaggaag
aacgacaagaaagccgagaaagccgcagaggacccccctgccaagctgcttgacgacctg
ttccagaagaccaaggcagcgccctgtatatactggcttcccctcaccgaggaaacgttc
gccctgcgggaggcggccaacgcggagcgcgccaaggagcgggagcggaaccgcaaggag
caggacgaggaggaggagaagaagcggaaggaggaggagcagcagcggaaggagcgggtg
aaggcgggcagcgggccgccggcagagcgggcgccgcggggcgagggagacaaggaccga
gacggggagagagagagggagcgggaccgcgggagggacagaggggagcgggacgggaac
aaacgcagggaggcgtcgcgtaggccgggggctggcggcagcgctggtggcggcggaggt
ggcggcagcagcggcggcggtggaggaagcagcaatgcaggcaggggccggcgctcccat
agccgtagcaacccgcgggagcggcggcgctaa
DBGET
integrated database retrieval system
