Gadus morhua (Atlantic cod): 115550494
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Entry
115550494 CDS
T10832
Symbol
lamb1
Name
(RefSeq) laminin subunit beta-1 isoform X1
KO
K05636
laminin, beta 1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04510
Focal adhesion
gmh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115550494 (lamb1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115550494 (lamb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Alanine_zipper
RAC_head
Laminin_I
Motif
Other DBs
NCBI-GeneID:
115550494
NCBI-ProteinID:
XP_030221443
Ensembl:
ENSGMOG00000000769
LinkDB
All DBs
Position
9:complement(16241014..16270086)
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AA seq
1784 aa
AA seq
DB search
MVVQRVSSSVSAGALVSAQQYEGQYELALPEYSDVCTEGSCYPNTGDLLIGRSHQLSSTS
TCGLHRPEPFCIVSHLQEEKKCFVCDSAALYNQHGNQSTSHRVENVVTTFAHNRLKTWFQ
SENGEEKVTIQLDLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKTWKVYRYFAYDCETS
FPDVYHGSMRKVDDVICDTRYSDIEPSTEGETIYRVLDPVFYIDDPYSPKIQDLLKITNL
RVKFTKLHTLGDNLLDSRMEIKEKYYYAVYDMVVRGNCFCYGHASECAPVKGTGEAMEGM
VHGHCMCNHNTKGLNCEKCHDFYHDLPWGPAEGRNTHACKKCNCNSHSAECHFDMAVYVA
SGNVSGGVCDECQHYTMGHHCEQCKPFFYQHPEKDIRDPNICQQCNCDPVGSMHGGICDR
MTDVRSGLIAGQCRCKTNVEGERCDRCRQAHHGLSQHPLGCQACSCNSLGTVPGASPCDT
DSGECYCKRLVTGRDCDQCLPQHWGLSNDMDGCRQCDCDLGGAVNNNCSQETGQCECREH
MFGRRCDQVESGFYFIALDHYTYEAEEAKFGPGVTVVQRPHPQDRSPTWTGVGLVNVPEG
AFLEFSVDNIPHSMEYDIIIRYEPQLPDQWEEVLMTVMRPGPITADSRCANTMPDDDNQM
NALHPGSRYVVLQRPVCFETDLNYTIRLSLPLYSALSDVQSPYTLIDSIVLMPHCKNLDL
FTGSEWDTFQRYRCLENSQSVVKTPMTDICYNYIFSVSALLHQGAKACQCDPQGSLSTVC
EPSGGQCQCRPNVAGRNCDSCSPATYQFGPNGCRACECDPQGSESSFCDALGGQCACLRG
AYGRQCDRCLPGHWGFPSCRPCGCNGHAEDCDPHGGQCLGCREFTTGYGCDRCLEGYYGD
PQLGSGDHCRPCMCPDGPGSGRQFAGSCYLGQDDLQVQCVCSPGHRGARCDECSPGFYGN
TQEAGGQCQQCQCNNNIDMLDPGACDAATGRCLKCLYHTDGPGCHSCRLGYYGDALTQSC
RKCVCNKLGSTAVSCPADGDCHCDGTSGQCQCLPMVGGQHCDRCLPDTWNLASGRGCEIC
DCDPAHSYGSSCNEISGQCSCNAGFGGRTCRECRELYWGDPEVKCHACDCEPRGTAEQQC
NKASGRCVCVEGVSGPRCDVCARGYSGTFPDCQRCHQCFADWDVVVGQLANQTHRLVTKV
NGIKASGITGPYKQTMDNLERSAADVSTLLAQNPATQPLSEIQGLLQQATDLMAELGEKL
NQTEESLALVKAEDNSTNSKLDALRDDAQKLQRTVQDLLDQVEFIKNSDIRGATDSVTKY
YKQSLAAEARANASTVDAGSPTESSATLRRATESQMNQTKDEFLRRQEEHAKRLDDLAGE
LETLDLSELSEKTCGSPAGQEACSDSPCGGLNCVDGQGKRRCGGEGCDGLVSLAHNSWQK
AQDFDKEITSAMEEVEKLSKMVSEAKLKADEAKLSAQDVLQKTNQTKQRVDRSNEELRTL
IKQIRDFLTEDAADLESIEKVANKVLAMQMPTTPAQLQNLTEEIRERVGDLGHVESILNQ
SAEDIQKAENLLEEARRASKEASDVRDSAVLVKEALEEAERVQATASQAIRQANSDIKDT
NKLLSSVETETTDSEFRLNNATQRLQVLERDVTLLRDQVQNTSLSVEQTQKDAHSINQVA
EKVKKTLDGELKDKYTMVDGLISEKGEGVAEAKKRAELLQQEAKDLLLQASDKLQLLKDL
EKSYEDNQRTLEEKANQMVELEKAVKELLDDISQKVTVYSTCLF
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atggttgtccaacgtgtctcctcttcggtatcagcgggggccctcgtctcggcccagcag
tacgagggccagtacgagctcgccctccccgagtacagcgacgtatgcacggaggggagc
tgctatcccaacacgggagacctcctcatcggccgatcccaccagctgtccagcacatcc
acatgcggactgcaccgacctgaacccttctgtatcgtgagccacttacaggaagagaag
aagtgctttgtgtgcgactcggcagccctctacaaccagcacggcaaccagagcaccagc
caccgcgtggagaacgtggtcaccaccttcgcccacaaccgcctgaagacctggttccag
tcggagaacggtgaagagaaagtgaccatccagttggacttggaggcggagtttcacttc
acccatctcatcatgaccttcaagaccttccgaccggctgccatggtgatcgagcgctcg
gcggacttcgggaagacgtggaaggtgtaccgctactttgcgtacgactgtgagacctcg
ttccccgatgtctaccacggctccatgcggaaggtggacgacgtcatctgcgacacccgc
tactccgacatcgagccatccacggagggagagaccatttacagagtgctggaccccgtc
ttctacatcgatgacccttacagccccaagatccaagacctgctgaagatcaccaacctc
agggtgaagttcaccaagctccacaccctgggggacaacctgctggactcccgcatggag
atcaaggagaagtactactacgccgtgtacgacatggtggtgcgggggaactgcttctgc
tacggccacgcctcggagtgcgcccccgtcaagggcaccggggaggcgatggagggcatg
gtccacggtcactgcatgtgtaaccacaacaccaaggggctgaactgtgagaagtgtcac
gacttttaccatgacctgccctggggcccggcagagggccgcaacacacacgcctgcaag
aagtgtaactgcaacagccactctgccgagtgccacttcgacatggcggtgtacgtcgcc
agcggcaacgtgagcggaggcgtgtgcgacgagtgccagcactacaccatgggacaccac
tgtgagcagtgcaaacccttcttctaccagcaccccgagaaggacatcagggaccccaac
atctgccagcagtgtaactgcgacccggtgggctccatgcacggcgggatctgtgaccgc
atgacggacgtgcgctccgggctgatcgcgggtcagtgccgctgcaagaccaacgtggag
ggagagcgctgcgaccggtgcaggcaggcccaccacggcctcagccagcacccactgggg
tgccaggcatgctcctgtaactccctgggaacggttccgggagcaagcccctgtgacacc
gactctggagagtgctactgtaaacgcctggtcaccggacgagactgtgaccagtgtctg
cctcaacactggggtctgagtaacgacatggatggctgcagacaatgcgactgtgacctg
ggaggggccgtcaacaacaactgttcccaggagacgggccagtgtgagtgcagggagcac
atgttcggccggcgctgtgaccaggtggagtccgggttctacttcatcgctctggaccac
tacacctacgaagcagaggaagccaagtttggaccgggtgtcaccgtggtgcagagaccc
cacccccaggaccgcagtcccacctggacgggcgtcggcctggtcaacgttcccgagggg
gccttcctggagttctccgtggacaacatcccgcactccatggagtatgacatcatcatc
cgctatgagcctcagctccctgaccaatgggaagaggttctgatgacagtgatgcggcct
ggaccaatcacagcagacagccgatgtgccaacaccatgcctgatgacgacaaccaaatg
aatgccctccacccaggctcccgctacgtggtgctgcagaggcctgtgtgcttcgagacg
gatctgaactacaccatccggctgagcctgcctctctactcagccctgagcgacgtccag
tccccctacacgctcatcgactcgattgtcctgatgcctcactgcaagaacctggacctc
ttcacgggctccgagtgggacaccttccagaggtaccgctgtctggagaacagccagagc
gtggtcaagacgcccatgacggacatctgctacaactacatcttcagcgtgtctgccctg
ctgcaccagggggccaaagcatgccagtgtgacccccaggggtccctcagcacggtgtgc
gagcccagtggcggccagtgccagtgtcgacccaacgtggcgggcaggaactgcgacagc
tgctcccccgctacctaccagtttggacccaatggctgcagagcctgcgagtgtgacccc
cagggctcggagagctcgttctgcgacgcgttgggggggcagtgcgcgtgcctgcgcggg
gcgtacgggcgccagtgcgaccgctgtctgcccggccactggggcttccccagctgccgg
ccctgcggctgcaacggccacgccgaggactgcgacccccacggcgggcagtgcctgggc
tgccgggagttcaccacgggatacggctgtgaccggtgtctggagggttactacggcgat
cctcagctgggctccggggaccactgccgtccctgtatgtgccccgacgggcccggcagt
ggcaggcagttcgctggaagctgctacctgggtcaggatgacctccaggtgcagtgcgtc
tgcagccccggccacagaggcgcccggtgtgacgaatgctcccctggtttctatggcaac
acccaggaggcgggcggccagtgccagcagtgccagtgcaacaacaacatcgacatgctg
gacccgggcgcgtgcgacgccgccacgggccgctgcctcaagtgtctgtaccacaccgac
gggcccggctgccacagctgcaggctgggttactacggcgacgccctgacgcagagctgc
aggaagtgtgtgtgcaacaagctgggcagcacggcggtcagctgcccagccgacggggac
tgccactgcgacgggaccagcggccagtgccagtgcctgcccatggtgggggggcagcac
tgcgaccgctgcctccccgacacctggaacctggccagcgggcggggctgcgagatctgt
gactgcgacccggcccactcctatggaagctcctgtaacgagataagcggccagtgttcc
tgtaacgccggctttggaggacgcacctgcagggagtgcagagagctgtactggggcgac
ccagaggtcaagtgccacgcctgcgactgcgagccccgggggaccgccgagcagcagtgc
aacaaagccagcggccgctgcgtgtgcgtggagggggtgtccggcccgcgctgcgatgtg
tgcgcccggggctactcgggaaccttccccgactgccagcgctgccaccagtgcttcgcc
gactgggacgtggtggtgggacagctggccaaccagacccaccggttggtcactaaggtg
aacggcatcaaggccagcggcatcacgggtccctacaagcagaccatggacaacctggag
aggagcgccgccgacgtcagcaccctgctggcccagaaccccgccacccagccgctgtcg
gagatccagggcctgctccaacaagccaccgatctgatggccgagctgggcgagaagttg
aaccagacggaggagtctctggcgctggtgaaggcggaggacaacagcaccaacagcaaa
ctggacgccctgcgggacgacgcccagaagctgcagcgcaccgtccaagacctgctggac
caggtggagttcatcaagaactctgatatcagaggggcgacggacagcgtcactaaatac
tacaagcagtctctggcggcggaggcccgagcgaacgcctccaccgttgacgccggcagc
cccacggagagctctgccaccctgcggcgagccaccgagagccagatgaaccagaccaag
gacgagttcctccggcgccaggaggagcacgccaagagactggacgacctggccggagag
ctggagaccctcgacctatcagagctcagcgagaagacctgtggcagcccagcaggacag
gaggcctgttcggactccccctgtgggggtctgaactgtgtggacggccagggcaagcgg
aggtgtggaggggagggctgtgacggcctggtgtccctggcccacaactcctggcagaag
gcccaggactttgacaaggagataaccagcgccatggaggaggtggagaagctctccaag
atggtgtctgaggccaagctgaaagcagacgaggccaaactgagcgctcaggacgtcctg
cagaagaccaaccagaccaagcagcgcgtggaccgcagcaacgaggagctacgcaccctc
atcaagcagatcagagacttcctcaccgaggacgcagccgacctggagagcatcgagaag
gtggccaacaaggtgctggccatgcagatgcccaccacccctgcccagctgcagaacctg
accgaggagatccgggagcgtgtgggagacttgggtcacgtggagagcattctcaaccag
agcgccgaagacatccagaaggcagagaaccttctggaggaagcccgccgagccagtaag
gaggcgtctgacgtgcgggactcagcagtgctggtgaaggaggccctggaggaggctgag
cgggtccaggccacggccagccaggccatccgacaggccaactccgacatcaaggacacc
aacaagctgctctcctcggtggagacggagacaactgattctgagttcaggctcaacaac
gccacccaaaggctacaggtgttagagcgagatgtcacactcctccgcgaccaggtccag
aacaccagcctgagtgtggagcagacccagaaagatgcccacagcataaaccaggtcgca
gagaaagtcaaaaagacccttgacggtgagctgaaggataaatacaccatggtggacggg
ctgatctctgagaagggagagggtgtcgctgaggccaagaagagggcggagcttctgcag
caggaagccaaagatctcctcctacaggctagcgacaagctacagcttctgaaagacctg
gagaagtcgtacgaggacaaccaaagaactttggaggagaaggccaaccaaatggtggaa
cttgagaaagcagtcaaagaacttctggatgacatcagccaaaaagtcactgtttacagc
acctgtcttttctag
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integrated database retrieval system
