Gadus morhua (Atlantic cod): 115550620
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Entry
115550620 CDS
T10832
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03022
Basal transcription factors
gmh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115550620 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
115550620 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115550620 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
gmh03400
]
115550620 (gtf2h1)
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115550620 (gtf2h1)
DNA repair and recombination proteins [BR:
gmh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115550620 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
115550620
NCBI-ProteinID:
XP_030221684
Ensembl:
ENSGMOG00000018183
LinkDB
All DBs
Position
9:complement(22835767..22847829)
Genome browser
AA seq
548 aa
AA seq
DB search
MASLSEEVLLVLKKVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYSDIRCQKISPDGK
AKIQLQLVLHTGESSTFHFSNDSSALTDREAAKDLLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRMSTTNTENTLSDKKQDVGISAAFLADIRPQTDGC
NGLRYNLTPDIIESIFRTYPAVQQKYGENVPHNLTEKEFWTRFFQSHYFHRDRISTGALD
IFSECAKQDEKGLKSMVVQGVKNPLVNLLSLEDKTIEEGYGFSAAASTSNPNRTGKENSN
SAIIKRFNHHSAMILAAGSRRGDAPNDQASETSSTDGNSRDSDLFQPPIKKVKLQEAIDY
LDLQREDGPKTVALNLKKSDRYAHGPVPLESQKYTTSQDIINSITCIRHEMANYVPNLAQ
VLTSSAVSSAIAALSPGGVLMQTGTQQAINQMVPSEVQGELKHLYIAAGELLRHFWTCFP
VNSPFLEEKVVKMRSNLERFQMTKLRPFQEKVQRQYLSANITGHLEEMLQTAYNKLHAWQ
TRRMMRKI
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgctgtccgaggaggtgctcctggtgctgaagaaagtccgacagaggaagcag
gacggtacgctgtacctaatggcggagcgcatcgcctggggccccgagggcaaggaccgg
ttcaccgtcagccacttgtattcagatatccgctgtcagaagatcagtccagatgggaaa
gccaaaatccagctccagcttgtgcttcacactggggagagcagcacattccacttctcc
aacgatagcagtgccctcacggaccgggaagctgccaaggaccttctgcaacagctgctg
cccaagtttaagaagaaggccaataaggaactggaggagaagaatagaatgctgcaagaa
gacccggtacttttccaactgtacaaggacctggtggtcagccaagtgatcagcgctgag
gagttctgggccaaccggatgagcacgaccaacacggagaacactctgtccgacaagaag
caggatgtgggcatatctgcagccttcctagctgatatcagacctcagacagacggctgc
aatggcctgaggtacaacctgacgcctgacatcatcgagtccatcttccgaacatacccg
gcagtgcaacagaagtacggtgagaacgtgcctcacaacctcactgagaaggagttctgg
acgcgcttctttcagtcccactacttccatcgagaccgcatcagtacgggcgccctggac
atcttctcagagtgcgcgaagcaggatgaaaagggtctaaaatcgatggtggtgcaaggt
gtaaagaatccgctggtgaacctcctgtcattggaggataaaacaatagaagagggctat
ggcttttccgcagctgcttctacatccaatcccaacaggaccggtaaggagaacagcaac
tctgccatcataaagcgtttcaaccatcacagtgccatgatacttgccgccggctcgcgg
agaggtgatgcgccaaacgaccaagctagcgagactagcagtacagacggaaactccagg
gattctgatctcttccagccccccattaaaaaggtgaagttacaagaagccatcgattat
ttggatcttcaaagagaagatggaccaaaaaccgtggcattgaaccttaaaaaatcagac
aggtatgcccatggtcctgtgccacttgagtctcaaaagtacaccaccagtcaggacatc
atcaactctatcacctgtattcgacacgagatggccaactacgtaccaaacctagctcag
gtgttaaccagcagtgctgtgagttctgccatcgctgctctgtctccaggaggagtctta
atgcagacaggcacgcagcaagccataaaccagatggtgcccagtgaggttcagggagag
ttaaaacatctgtacatcgctgctggggagctgttgcgacacttttggacatgttttcct
gtaaacagtcccttcttagaggagaaggtggtcaaaatgcggtctaacctggaaagattc
cagatgaccaaactgcggccctttcaagagaaggtccaacgacagtatttaagtgccaat
attaccggccacttggaggagatgttgcaaacggcctacaacaaattacacgcctggcaa
acccgccggatgatgagaaagatctga
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