Gadus morhua (Atlantic cod): 115550647
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Entry
115550647 CDS
T10832
Symbol
col20a1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
gmh Gadus morhua (Atlantic cod)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
115550647
NCBI-ProteinID:
XP_030221738
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Position
1:complement(20739577..20772476)
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AA seq
1579 aa
AA seq
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MARCLLAFLLLLTSEVHAQGRLKLTVLSEDRLQMKWREADGPVQGYKVRVKPIADVPQPE
LMLTTTRGRATVAGLDPAQEYNLQVLLLNGTAERLLAKRRFTISGLREEELLRSGGRDGK
RRLSPIGSGSGDLDDVTGALLGAPTVLYQDTPSPTRPLPTSTTSTTTTSATVAGKTDSTD
PASSDYEDPPPDRTPKEKRKKKKDKERPKGREKEPKREAQNNPRKTTPSQPTTGGSPRAP
VDCDAEAPAEVVLVVDGSWSIGRTDFRRVREFLEGVASRFRIGANHVRFALTQYSSDPRT
EWQLNNFTNKEDLIEAIRSFRYKGGNTFTGQALLHVMDETLGAESGARPDTPVFLILLTD
GKSQDDAVTAGNRLKATGVEIIGIGVKNADEAELRQVASPPVELNVYSVHHFHLLSKLVP
RLVHILCGRIADRHAARRPERGPPTPDPVQSDPSPTDLRFSELGSREVRLHWSGPAGLGR
PVLQYRVVYHSAEGQSPQEVVVNGSTTTVLLGSLSSQTLYHISIFPVFKENVGLPLRGTV
TTETLVRPSDLQVSPSSPSSLGVRWGAAPRATHYMVLYSALNLGEPDDAKELRFGADQTS
VELVGLIPATDYSVTLYALYDEEPSDPITAQGATAPLPRPQSIQLPMVTHSMLRVSWVPG
AVDVPGHRVTCSTNHGSDVKQVEVTGVNTVLVPNLSSLSRYLVSVQSQYPQGLSAALTSN
VTTLRVPAPTDLRVTNFSGGELTLHWEPAADDAISYLIKWISLSGGGDLRQLRVPGPSEG
ALLEGLEDEKEYQVSLSALYADGAQSEAVATRYSTLSGGGPTAVTVAEETPVSLLVSWDS
PNAHVLQYRVSYSALSATEPRDTTLVLPGSQRQVVLQKLLPDTRYSILVTAEYRNKEGGT
GSAQGKTTSLRVSSVSVLRSDHASMCVSWRPVSVVDSYRIVLQSVKDKSTREQQVAEGGS
SLCFSELEPETLYRVSVHSRLGATEGAAVSILHPTASAPVRIPVPPRVQATHNEVCPVVT
IRNNIVKGFNMMEAFGLTQGSHSSVEGVTFEPFIFSSLPSYSLYPDIQLTQDTRLVHPAG
VSPEHTISLVFRLLQSTPRESFSLWQITDNDFQPKMAVVLDPTTKHLVYLSLDYRGEVQE
LTFDQPQVRKLFYGSYHKVHLSVSQVSVSLWVDCQRVGERAARPLGPLPSDGFETLGKLT
KTRGPRSGSVPFQLQSFEIVCNTTWASEDTCCDLPGLRDEESCPPPAYACTCSSDVPGAP
GPGGTRGRPGVRGEKGEKGDQGSKGEVGPPGLPGFEGGLGPLGNRGPPGAPAQGKMGPPG
ARGEKGDLGKPGNQGAPGLVGAKGEIGPPGPRGIRGLEGNIGAPGLTGPRGSQGMPGHPG
QSGGRGPFGLVGPTGLPGNKGERGEKGEPQSMAMIYQLVTQACEQLVHKEVMKLDLFLNE
VSRKPAPIAEPEGPPGEPGIPGGVGSPGPRGNQGRIGPRGMPGRTGYPGEQGRRGVSGEK
GSPGANEQGPPGIAGHAGSAGESKLGAPGPRGEDGKLGPPGILGASGQPGEVGPPGVCDS
ANGCQGNVQQADPNYGYQP
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atggctcgctgtctgctcgcgttcctcctgctccttacctcagaggtccacgcccagggt
cgtctgaagctcactgttctgtcggaggaccggctgcagatgaaatggcgggaggctgac
ggccccgttcagggctacaaggtccgagtcaagcccatcgcagacgtgccccagccggag
ctgatgctgaccaccacgcgggggcgggccacggtggccgggctggacccggcccaggag
tacaacctgcaggtcctgctgctcaacggcacggccgaaaggctgctggccaagagacgc
ttcaccatatctggcctgagggaggaggagcttctgcgtagcggaggtcgcgacgggaag
aggaggctgtcgccgattggctcggggtcaggtgacctcgatgacgtcacaggcgccctg
ctgggggcgcccaccgttctgtaccaagacacgcccagcccaacccgacccctccccacc
agtactaccagtaccaccactaccagcgccaccgtcgctggtaagacagactctacagac
cccgcctcctcggactacgaagaccctcccccagataggacacccaaggagaagaggaag
aagaagaaggataaggagaggccgaaggggagggagaaggagcctaaaagagaggctcag
aacaacccgagaaagaccaccccttcacaacctaccacaggcggctccccgcgggccccg
gtggactgtgatgcggaggcccctgcggaggtggtcctggtggtggacggctcctggagc
atcggcagaaccgacttcaggcgcgtccgcgagttcctggagggcgtggccagccgcttc
cgcatcggagccaatcacgtccgctttgccctcacccagtacagctcggaccctcggacc
gagtggcagctcaacaacttcaccaacaaagaggacctgatagaggccatccgcagcttc
agatacaagggaggaaacaccttcacaggccaggccctgctccacgtgatggatgagacg
ctgggggcggagtcaggggcccggccggacacgcccgtcttcctgatcctgctcaccgac
ggcaaatcacaggacgacgccgtcaccgccggcaaccggctgaaggccaccggcgtggag
atcatcggcataggtgtgaagaacgcagacgaggcggagctccgtcaggtggcgtcgccc
ccggtggagctcaacgtctactccgtccaccacttccacctgctcagcaagctggtgccc
cgcctggtccacatcctctgcggacgcatcgccgaccgccacgccgccagacgaccggag
cgcgggcccccgacgcccgacccggtccagtccgaccccagccccaccgacctgcggttc
tcagagctggggtcccgcgaggtccggctccactggtccggtcccgccgggctgggccgg
cctgtgctccagtaccgcgtggtctaccacagcgccgagggccagtccccccaggaggtg
gtggtgaacggatccacaacaacggttctcctaggaagcctgtcctcccagaccctctac
cacatctccatcttccccgtgttcaaagagaacgtgggcctgcctctccgtggaaccgtc
accaccgagaccctggtgcggccgtctgacctgcaggtgtccccctcgtcccccagcagc
ctgggggtccgctggggggcggccccgagggccacgcactacatggtcctctactccgcc
ctcaacctgggggagcccgacgacgccaaggagctgaggttcggtgccgaccagacgtcc
gtggagctcgtgggtttgatcccggcgacggactactccgtgacgctgtacgctttgtac
gacgaagaacccagcgacccaatcactgcccagggagccacagcccccctcccccggccc
cagagcatccagttgcccatggttacccacagcatgctgagggtcagctgggtgccgggg
gcggtggacgtccccgggcacagggtcacctgctccaccaatcacggcagcgacgtcaag
caggtggaggtgacgggggtgaacacggtgctggtccccaacctgtcctctctgtcccgc
tacctggtctccgtccagtcccagtacccacaaggcctctctgccgcgctcaccagcaac
gtcaccacgctgagggtcccggcgcccaccgacctcagggtcaccaacttctccggcggg
gagctgaccctgcactgggagcccgccgccgacgacgccatcagctacctcatcaagtgg
atctccctcagtggggggggagacctccgacagctgcgggtcccggggcccagcgagggg
gccctcctggaggggctggaggacgagaaggagtaccaggtgtccctctccgcgctgtac
gccgacggggcgcagagcgaggcggtggccacgcgctacagcacgctgtccggcggcggt
ccgacggccgtcaccgttgccgaggaaacgccggtgagtcttctggtgagctgggactcc
cccaacgcccacgtcctgcagtaccgcgtctcctacagcgccctgagcgccacagagccc
cgcgacaccaccctggtgctgccgggcagccagaggcaggtggtgctgcagaagctgctc
cccgacacgcgctacagcatcctggtgaccgcggagtaccgcaacaaggagggcggcacc
ggctcggcccaggggaagaccaccagtctgagggtgagcagtgtgagcgtgctcagatcg
gaccacgccagcatgtgtgtttcctggaggcccgtgtccgtcgtcgacagttaccgcatc
gtcctgcagtcagtcaaagacaagagcacgcgggagcagcaggtggccgaggggggcagc
agcctgtgcttcagcgagctggagccggagaccctgtaccgcgtcagcgtgcactcccgc
ctcggggccacagagggcgccgccgtctccatcctgcaccccacagcgtctgcaccggtc
agaatccctgtcccgccgagagtccaggccacgcataatgaagtgtgtccagtggtcacc
atcaggaacaacatcgtcaaagggtttaacatgatggaggccttcggtctgacccaggga
agccactcctctgtggagggcgtgacctttgaacccttcatcttcagcagcctcccctcc
tactcgctgtaccccgacatccagctgacccaggacacccggttggtgcacccagcgggg
gtctctccagaacacaccatcagcctggtgttccgtctgctccagtccaccccgcgggag
tccttctctctctggcagatcaccgacaacgacttccagcccaagatggccgtcgtgctg
gaccccaccaccaaacacctggtgtacctgagtctggactaccgaggggaggtccaagag
ctgaccttcgaccagccgcaggtccgcaagctcttctacggcagctaccacaaggtccac
ctgtccgtcagtcaggtgagcgtctccctgtgggtggactgccagcgggtgggcgagagg
gcggcccgccccctggggcccctgcccagcgacgggttcgagaccctggggaagctgacc
aagaccaggggcccgcgcagcggctccgtcccgttccagctccagtcctttgagatcgtc
tgcaacaccacctgggcttcagaggacacgtgctgtgacctgccaggcctgagagacgag
gagagctgccctcctcctgcgtacgcgtgcacgtgctcctcagacgtccccggcgccccg
ggacccggggggactaggggaaggcctggcgtccgcggggagaaaggagagaagggggat
caaggttcaaagggggaggtgggccccccagggctgcctgggtttgaggggggcctgggg
cctctaggtaacagagggccccctggagctcctgcccaggggaagatgggccctccgggc
gctcgcggggaaaaaggagacttaggaaagccgggaaatcagggggcccctggccttgtg
ggggctaaaggggagatcgggcccccaggccccaggggcatcagaggtctggaggggaac
attggtgctccaggtctcaccgggccccggggttcccagggcatgcccggacaccccggc
cagtcgggggggaggggcccctttgggctggtggggcctacgggccttccaggaaacaag
ggcgagaggggagagaagggggaaccacagtctatggccatgatctaccagctggttaca
caagcctgtgaacagctagtgcataaggaggtgatgaagctggacctgttcctgaacgag
gtgagccgtaagccggcccccatagcggagcccgagggcccccccggagagccagggata
ccgggcggggtcgggtccccgggaccccgaggcaaccagggccgcatcggccccagagga
atgccggggaggacgggctaccccggagaacaggggaggcggggtgtgagcggggagaag
ggatccccaggggccaacgagcagggccccccggggatcgcaggacatgcaggttcagca
ggtgaatctaagctgggagcccccgggccccggggggaggatggtaagctggggccccca
ggtatcctaggggcctctggccagcccggagaggttggcccccccggggtgtgtgacagt
gccaacggttgccagggcaacgtacagcaagccgaccccaattatggataccagccctga
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