Gadus morhua (Atlantic cod): 115550653
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Entry
115550653 CDS
T10832
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115550653 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115550653 (sf3b3)
03041 Spliceosome [BR:
gmh03041
]
115550653 (sf3b3)
03036 Chromosome and associated proteins [BR:
gmh03036
]
115550653 (sf3b3)
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
115550653 (sf3b3)
Spliceosome [BR:
gmh03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
115550653 (sf3b3)
Complex B
115550653 (sf3b3)
Complex C
U2 SnRNP specific factors
115550653 (sf3b3)
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
115550653 (sf3b3)
TFTC complex
115550653 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
115550653
NCBI-ProteinID:
XP_030221750
Ensembl:
ENSGMOG00000008139
UniProt:
A0A8C4Z7A0
LinkDB
All DBs
Position
9:complement(17534409..17557753)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGISHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHSSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GADGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDESENLSPIMSCQIADLANEDT
PQLYVACGRGPKSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RTRFLAVGLVDNTVRIISLDPLDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYCYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQCTPRKFVIHPETNNLIVIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGAGQWASLVRLINPIQGTTLDLVQLEQNEAAFSVTVCRFASTG
DDWFVLVGVARDMILNPRSVAGGFIYTYRLSSAGDKLEFMHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHIPNLVTSIHTIGQRVVVTDVQESLFWVRYRRNENQ
LIVFADDTHPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacatcactttgcagcgtgccactggcatctcgcatgccatccatggc
aacttctcaggcaccaaaatgcaggagattgtcgtttctcgcgggaaaattcttgaactg
ctgcggcctgatgccaacacagggaaagtccacaccctgcttacgatggaagtgttcgga
atcgtgaggtccttgatggccttcagactcactggaggaaccaaagactacattgtggta
ggtagtgacagtggtcggatcgtcatcctggaataccattcctcaaaaaacatgtttgag
aagatccaccaggagacttttggcaagagtggttgcagacgcattgtacccggtcagttc
ctggctgtggaccccaaaggcagagctgtcatgattggtgcaattgaaaaacagaagctg
gtgtacattctgaacagagacgcggcggcaaggttgaccatctcctcccctctggaggcc
cacaaggccaacacgttggtctaccatgtggtgggggtggacgtgggctttgagaacccc
atgtttgcctgcctggagatggactatgaggaagctgacaacgaccctactggagaggca
gcagccaatacccagcagactctgaccttttatgaactggacctcggtctgaaccatgtg
gtccgcaagtacagcgaagccctggaggagcacgggaacttcctcattactgtgcctggt
ggtgcggatggtcccagtggcgttctgatctgctctgaaaactacatcacctacaagaac
tttggagaccagccagacatccgctgtcctatcccaagacgcaggaatgatctggacgac
cccgagcggggaatgatattcgtgtgctcggcaacccacaagaccaagtccatgttcttc
ttcttggcccagacggagcagggggatatctttaaggttacactggagacggatgaggag
atggttacggaaatcaggatgaagtattttgacaccatccccgtggcaacggccatgtgt
gtcctcaaaactggcttcctgtttgtgtcttccgagtttggaaaccactacctgtaccag
atcgctcacctgggcgacgatgatgaggagccagagttctcctcagccatgcctctggag
gaaggggacaccttcttcttccagccccgccccctcaagaacctggtgctggtggatgaa
tctgagaacctgtcgcccatcatgtcctgccagattgctgatttggcaaacgaggacacc
cctcagctgtatgttgcctgtggaagaggtcccaagtctaccctgagagtcctcaggcat
ggactggaggtgtcagaaatggctgtgtccgagttgcccggtaatcccaacgctgtgtgg
acagtgcgcagacacgttgaagacgagtttgacgcctacatcatcgtgtccttcgtcaac
gccacgctggtcctgtccatcggagagacggtcgaggaggtgacagactctgggttcctg
ggaaccacccccacactgtcctgctcgctgctaggcgaggatgccctggtgcaggtgtac
cctgacggcatccgccacatcagggccgacaagcgtgtgaacgagtggaagacccccggg
aagaagacgattgtccgctgtgccgtgaaccagcggcaggtagtgatcgccctcactggg
ggcgagctggtctactttgagatggacccgtcgggccagctcaatgaatacacagagcgt
aaggagatgtctgccgacgtggtctgcatgagcctggccaacgttccccccggcgagcag
cgcacccgcttcctggccgtgggcctggtggacaacacggtccgcatcatctccctggac
ccgctggactgtctgcagccgctgagtatgcaggccctgcccgcccaaccagagtcactc
tgtatcgtggagatggggggcgttgaaaaacaggacgagctgggagagaagggaaccatc
ggcttcctttacctgaacattggacttcagaatggagtgctcctcagaaccgttctggac
ccagtgaccggtgacctctctgacaccagaacacgctacttgggctcccgaccggtcaag
ctcttcagagtccggatgcagggacaggaagctgtgctggccatgtccagtcgctcctgg
ctgagctactgttaccagtcccggtttcacctgaccccactatcttatgaaaccctggag
tacgcctccggcttcgcctctgagcagtgcccagaaggcattgttgcaatctctaccaac
acactcaggatcttggccttggagaagctgggtgcggtcttcaaccaggtggccttccct
ctacagtgcacgccccggaagtttgtgatccaccccgagaccaacaacctcatcgtgatc
gagacggaccacaacgcctacacggaggccaccaaggctcagaggaaacagcaaatggca
gaggagatggtggaggcggccggagaagacgaacgggaacttgctgccgagatggcagca
gcgttcctcaacgagaacctgcctgaagccatcttcggggctcccaaagccggggccggt
cagtgggcctcgctggtccgcctgatcaacccgatacagggcaccactctggacctggtg
cagctggagcagaacgaggccgccttcagtgtgacagtgtgtcgtttcgccagcaccgga
gatgattggtttgttcttgtgggcgttgctagagacatgatcctcaaccccaggtcggtg
gccggaggcttcatctacacctaccggctctccagtgcaggagacaagctggaattcatg
cacaagactccggtggaagacgtgccattggccattgctccattccaggggcgggtcctg
gtgggcgttggtaaactgctgaggatttacgaccttggcaagaagaaactacttaggaag
tgtgagaacaagcacattcccaacctggtgaccagcatccacaccattgggcagcgcgtg
gtcgtgacggacgtgcaggagagcctgttctgggtgcgctaccgccgcaacgagaaccag
ctgatcgtgttcgccgacgacacgcacccccgctgggtgaccaccgcctgcctgctggac
tacgacaccatggcctcggcggacaagttcgggaacatcagcatcgtgcgtctcccccca
aacaccagtgacgacgtggacgaggaccccacagggaacaaagcgctgtgggaccgaggc
cttctcaacggcgcctcgcagaaggctgaggtcattatgaactaccacatcggagagact
gtgctgtccctgcagaagaccactctcatccctggggggtcagagtccctcgtctacact
acgctgtccgggggcatcggcatcctggtccctttcacctcacacgaggaccatgacttc
ttccagcatctggagatgcacatgcgctcagagttccctcccctgtgtggccgggaccat
ctcagcttcaggtcctactatttcccagtgaagaacgtgattgatggagacctgtgtgag
cagttcaacagcatggaccctcacaagcagaagagcgtggcggaggagctcgaccggacg
ccgccggaggtgtcgaagaagctggaggatatccgaacacgctacgccttctag
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