Gadus morhua (Atlantic cod): 115550696
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Entry
115550696 CDS
T10832
Symbol
utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
115550696 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gmh03009
]
115550696 (utp4)
Ribosome biogenesis [BR:
gmh03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
115550696 (utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
WD40_Prp19
WDR55
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
DUF7165
Beta-prop_CAF1B_HIR1
Beta-prop_WDR35_TULP_N
Ge1_WD40
Beta-prop_SPT8
Beta-prop_SCAP
PROPPIN
Lactonase
RH_dom
WD40_CFAP43
Motif
Other DBs
NCBI-GeneID:
115550696
NCBI-ProteinID:
XP_030221821
Ensembl:
ENSGMOG00000014309
LinkDB
All DBs
Position
9:18526556..18533315
Genome browser
AA seq
684 aa
AA seq
DB search
MGEFKVHRVRFFDYMPSAISAMAFNVHTERLAVARADGTVEIYNFADNCFQEKVIPGKDG
RTVEALCWAGQRLFSTGLNGEIVEYDLENLRSKYTVEAYGGPVWTISSNSQGTQLAVGCE
DGTVKIFELVEDSIQFQSNFDRLKSRVLSLSWHPSGTQIAAGTMDMIRVFNVTTGHATQR
MMVDRAAGANKKKEVAVWSVVFLSDNTVISGDSAGKVQVWDSQMGTLIRTHLVTKWDVMA
LAVSRDESSLLAGTSEGSVVQFQFISARLDQPDKEWQRTRTLRSHSHDVRALVHTDTAAV
SGGNDAHLVVRPFMEKVVKGSKESAPCKITFPHRSLVSCGKKAGILLFQFPERLEVWRLG
ESNENGIPGEELSVTKKPEALIHLKRKGDDHICCSTLSPCGGWLAYASASSVRLFQLQYD
NDSIALTKVKLPKVLRWANQLCFSADSSRLFASFSQSSVLVFALSKSEAKYVHTLKPKSV
SKQAVHLMSTSDDGQWLATANSDCEVHVYNLKKLKYHCTVPVYGSCPSAMAIHPTGSNVV
MVHADQKIFEYSLEQKEYTEWSRSLAKKGLHGSWLNRVAPVTHVSFSASNPDYIILHDMN
MFCIIDKSLPLPEKDSDLCNQNQLRSMNEAARVKDSHAFKICEMFKNLLCVGLMEDHSLV
VVERPLLDIATRLPAPVRQKKFAT
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgggggaattcaaagtgcaccgggtgcggttcttcgactacatgcccagtgccatcagt
gccatggcattcaacgtgcacacagagagactcgcggtggctcgtgctgacgggacagta
gagatctacaacttcgcagacaactgctttcaagaaaaggtgatcccggggaaggatggc
aggacagtcgaggcactctgctgggctgggcagcgtctgttcagtacaggtctcaatgga
gagattgtggagtatgacctggagaacctgaggtcgaagtacaccgtggaagcgtacgga
ggaccagtctggactatcagcagcaacagtcaggggacacaacttgcggtcggttgtgag
gatgggacagtgaaaatctttgaacttgtggaagacagtattcagtttcaaagtaacttc
gacagactgaaaagtcgtgtcctatctctttcatggcatccatctggcacacaaattgct
gctggcaccatggacatgatccgtgtgtttaacgtcaccacaggccacgccactcaaagg
atgatggtggatagggctgcgggggccaataagaagaaagaagtggcggtctggagcgtg
gtcttcctgtccgacaacacggtcatcagcggagactctgccgggaaggtccaggtgtgg
gacagccagatgggcacgctgatccgcacccacctggtgaccaagtgggacgtcatggcg
ctggcagtctcccgggacgagagcagcctgctggcgggcacgtcggagggcagcgtggtc
cagttccagttcatctcggcccgcctggatcagcccgacaaggagtggcagcgcacccga
accctgaggagccactcgcacgacgtccgggccctggtccacacggacaccgccgccgtc
tcaggaggaaatgatgcgcatctggtagtccgaccttttatggagaaagttgttaagggt
agcaaggaatctgcgccgtgcaaaatcaccttcccacatagaagcctggtgtcgtgtggg
aagaaggcaggaattttgctcttccagtttcctgaacgcttggaggtctggagactcggt
gaaagcaacgaaaacgggataccaggagaggagctatctgtgacaaagaaacccgaggca
ctgattcacctgaagagaaagggcgatgatcacatttgctgcagtactctgtctccatgt
ggaggctggctggcctacgcctctgcctccagcgtccgtctcttccaactccagtatgac
aacgacagcatcgccctcactaaggttaagctgccgaaggtccttcgctgggccaaccag
ctgtgcttctccgccgactcctccagacttttcgcttccttcagccagtcatcagtcctc
gtctttgctcttagcaagtcggaggccaaatacgtgcacaccctcaaacccaagtcggtc
tctaagcaggcggttcacctgatgtccacaagcgacgacggccagtggctagccaccgcc
aactctgactgtgaggtccacgtctacaacctcaaaaaactcaagtaccactgtacggtc
ccagtgtacggctcctgtcctagtgccatggccattcacccaacaggcagtaacgttgtc
atggtgcacgctgaccagaagatctttgagtactccttggagcagaaggagtacaccgag
tggagtcgcagcctggcgaaaaagggccttcacggctcgtggcttaacagggtcgcaccc
gtcacccacgtctccttcagcgccagcaacccagactacatcatcctgcatgacatgaac
atgttctgcatcattgacaagagtctgccacttccggagaaagactctgacctgtgcaat
caaaatcaactacgttctatgaatgaggctgcaagggtcaaagacagccatgctttcaag
atttgtgagatgttcaagaacctgctctgcgtgggcttgatggaggaccattccctcgtc
gtggtggagcgccccctactggacatcgccactcggttacctgcaccggttcgacagaag
aagtttgccacatag
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