Gadus morhua (Atlantic cod): 115550906
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Entry
115550906 CDS
T10832
Symbol
cnot4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115550906 (cnot4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmh03000
]
115550906 (cnot4)
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115550906 (cnot4)
04121 Ubiquitin system [BR:
gmh04121
]
115550906 (cnot4)
Enzymes [BR:
gmh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115550906 (cnot4)
Transcription factors [BR:
gmh03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
115550906 (cnot4)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115550906 (cnot4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115550906 (cnot4)
Ubiquitin system [BR:
gmh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115550906 (cnot4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
DZR_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
115550906
NCBI-ProteinID:
XP_030222151
Ensembl:
ENSGMOG00000034360
LinkDB
All DBs
Position
9:7868793..7878776
Genome browser
AA seq
844 aa
AA seq
DB search
MSHSPKMKDDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQSEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKMNPSFLQSPICATEKSKSKANSTQSRANNGNGKDGWPTLSGHSKLANGLSEDRK
SPPLLDYLDQEVLAADGLDTTDGPGHGSAISPFSSNCDSNSPSEKPPEPMSIVNGETLQQ
MACSDSPSPPPGLSKPGLVVPVSVADMAARSPFEGAAAESQSLFSDNSNFRHPNPLPAGL
PPFPSSPRSSADWPMTPEPQSLFASDTIPVSSSTDWQAAFGFGSSSKQPQDDDLGFDPFD
VTRKALADLIEKELSVQDQGPLSPGPQSHGLLPPHLNNHHHHHHQHPPHHHQPSPSASAS
LHHFPMGPPRLSQLHHRTIYSSFSFPGSQGSPAGQPQPSSRHPWMAGLPAARNNLAHLNH
SASTASHSNFLDLNLPRQHSTGLGGIPISENSSSIDGLNVKEWQDGLRALLPNININFGG
LPNSSSSSSSSSSSSSNSVNHIGGPAGPAGISHSLSWDGTSSWMDPAIIKGIPASAGNGS
DSLPDDNPPHWLKSLQALTEMDGPPSSASAQPLRSGLLDGLNHHHHNPHHPHPLQQHPHP
HHHHHQNHLPLHHRAAGGWAPYLPSATASPGSQFHSPPPGFQTAFRPAGQPNTELLQSAA
VDRH
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacagccccaagatgaaggatgaccccatggagtgtcccctgtgtatggagccg
ctggagatcgacgacgtcaacttcttcccctgcacctgtggctaccagatctgccgcttc
tgctggcaccgcatccgcaccgacgagaacggcctctgtcccgcctgcagaaagccgtac
ccagaggaccccgccgtgtacaagcccctctcacaggaggagatccagaggatcaagaac
gagaagaagcagaagcagagcgagaagaagcagaaggtgaccgagaaccgcaagcatctg
gccagcgtccgagtcgtccagagaaacctggtgttcgtggtgggcctctcccagcgcctt
gccgaccctgaggttcttaaaaggcccgagtactttgggaagtttggtaaaatacacaaa
gtggtcatcaacaacagcacatcttatgcgggttcacaggggcctagtgccagtgcttac
gtcacgtacatccggtctgaagatgccttaagagcaatacaatgcgtcaacaatgtggtt
gtggacggtagaacgctgaaggcctctttaggaaccacaaaatactgtagttacttcctt
aaaagtatgcagtgtcccaaaccagattgtatgtatttacatgagttgggggatgaggca
gccagctttactaaagaagagatgcaggcgggaaagcaccaggaatatgagcagaaactt
cttcaggacctctataaaatgaaccctagctttctacaatcccccatatgtgcaacagag
aagtccaaaagtaaagcaaattccactcaaagcagagccaacaatggcaatggaaaggat
ggctggccaacactgtcggggcatagcaagctagccaatgggctttcagaagaccgcaag
tccccgccccttttagactatttagatcaggaggttcttgcggcagatgggttagacact
acagacgggccgggccacggcagcgctatctctcccttctcctccaactgcgacagtaac
agtcccagtgaaaagcctccagaaccaatgagtatagtgaacggagagactttacaacag
atggcgtgcagcgactccccgtcccccccgccaggcctgtccaagccgggcctggtggtg
cccgtgagcgtggcggacatggccgcccgctcgcccttcgagggcgcggccgccgagtcc
cagtcgctcttctccgacaacagcaacttccgccaccccaaccccctcccggccggcctg
ccccccttccccagctccccccgcagcagcgccgactggcccatgacccccgaaccacag
agcctctttgcctcagatacgatacccgtgtcctcctccacggactggcaggcggccttc
ggcttcggctcctcctcaaagcagccgcaggacgacgacctgggcttcgaccccttcgac
gtcacccgcaaggccctggccgacctcatcgagaaggagctgtctgttcaggaccagggc
cccctctccccggggccccagagccacggcctgctgcccccgcacctcaacaaccaccac
caccaccaccaccaacaccccccccaccaccaccaaccctccccctccgcctcggcctcc
ctccaccacttccccatgggcccgccgcgcctctcccagctccaccacagaaccatctac
agctccttcagcttccccgggagccagggcagccccgccggccagccccagccgtcctcc
aggcacccctggatggcgggcctccccgccgcgcgcaataacctcgcacacttgaaccac
tcggccagcactgcctcacacagtaacttcctcgacctcaacctgccccgtcagcacagc
acaggactgggaggaatccccatctcagagaacagcagctctatagacggactaaacgtc
aaggagtggcaggacggcctgagagcactcctgcccaacatcaacatcaacttcgggggg
ctgcccaactcctcgtcctcctcgtcctcctcgtcctcgtcctcctccaacagtgttaac
cacatcggtgggccggcagggcccgcgggcatctcccacagcctcagctgggacggcacg
tccagctggatggaccctgccatcatcaaaggtatccctgcctcggcagggaacggctcc
gacagcctcccggacgacaaccccccgcactggctcaagtccctgcaggcgctcacggag
atggacgggccgcccagctcggcctccgcccagcccctccgcagcggccttctggacggc
ctcaaccaccaccaccacaacccccaccacccccaccccctccaacaacacccccacccc
caccaccaccaccaccagaaccacctgcccctccaccacagagctgccggcggctgggcc
ccctacctgccctctgccacggccagcccaggcagccagttccactccccacccccgggc
ttccagacggccttcagacccgcgggccagcccaacacagagctgctacagagtgccgct
gtggaccgccactga
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