Gadus morhua (Atlantic cod): 115551116
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Entry
115551116 CDS
T10832
Symbol
sin3a
Name
(RefSeq) paired amphipathic helix protein Sin3a isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
gmh
Gadus morhua (Atlantic cod)
Pathway
gmh04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
115551116 (sin3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gmh03036
]
115551116 (sin3a)
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
115551116 (sin3a)
REST complex
115551116 (sin3a)
Heterochromatin formation proteins
Other heterochromatin formation proteins
115551116 (sin3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
CENP-B_dimeris
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
115551116
NCBI-ProteinID:
XP_030222523
Ensembl:
ENSGMOG00000009232
LinkDB
All DBs
Position
9:complement(4699906..4723489)
Genome browser
AA seq
1351 aa
AA seq
DB search
MPAEGASPTILLQTRIRSKKSFPGSLSPLEHEFIMKRCVEEQETVFASQHQQQQQPQRRL
PGSAEAFQHRVLAPAPAVYEPAPDSMQPTAGVQYAGPQAYQVPNAAQNSAGHGHTSSPAV
HGGPAHHHSPAVQAHGPAGMHGHTPAPQATAQGQQFQRLKVEDALSYLDQVKLQFGNHPQ
VYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLPPGYKIEVQHNELVNV
TTPGQIHHITPHGITVQNIPMPGAPALPQAPLHAQLLALANPAASASAAATTTSAPVLLA
QPSPAKMSKTQQSPVLTPSGQSNPSIPVYTSPRSPPLQLHPPSGATPAGPAAQNNQPVEF
NHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVAR
LFKNQEDLLSEFGQFLPDANSSVLLSKTTAEKAESVRNDHGATAKKLQLNNKQRPSQNGC
PIRRHPAATTTAPVKPKHKLLNLKDSSTAESSKHGAGTESLFFEKVRKALRSAEVYDNFL
RCLVLFNQEVISRAELVQLVLPFLGKFPELFNWFKNFLGYREMSSHIESYPKERATEGIA
MEIDYASCKRLGSSYRALPESYTQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKT
QYEEHIYRCEDERFELDVVLETNLATIRVLELVQRRLSRMSAEEQAKYRLDNTLGGTSEV
VHRKAIQRIYGDKAADILDGIRKNPAMSVPIILKRLKIKEEEWREAQRGFNKIWREQNEK
YYLKSLDHQGINFKQNDTKVLRSKTLLNEIESIYDERQEQASEENAGPPTGPQLTLSYED
PQILEDAAALIIHHVKRQVGIQKEDKYKIKQVIHHFLPDLLFAQRGELSDAEEEEEDEDE
EADEEEDEEREGERDPAEGPRPKKHNGVAAVAAAAAAVAAGSPTKSKLLFGGTAAQKLRA
TGEDAYHLFLVNNNWYIFLRLHQTLCARLLRLYGQAERQIQDELRERDWEHEVLGLKREK
NDNPAVQLRLKEPMDIEVEDYYSAFLEMVRNLLDGNMEASQYEDSLREMFTIHAYTAFTM
DKLIQSIVRQLQHLVSDDICVHVTDLYLAESTGGATGGPSTAQAASSSVEALYQRKAEQL
MSDENCFKLTFLRNRGPVQLTVELLDSEEDNSDEPMDAGRWSDYVGRYLVSDSTSAELRE
HLAQKPVFLPRNLRRIRKYQQGREQLDKEAGEGARKSLDKEKMACMFQLNSYKMVYVFKS
EDYMYRRTALLRAQQSHDRVSTRLHNRFQAWVDAWAKVNVTPAMATETGAWLMGEDREEF
LPCVTSRNPEVLHFMNVNKYRVKYPAPSPAP
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgccagcggagggggcgtctccaactattttgttacaaacacgaatccggagtaagaag
tcttttcctgggtccctcagccccctggagcatgagttcataatgaagcggtgtgtggag
gaacaggagactgtgtttgcgtcccagcaccagcagcagcagcagccgcagcggcggctt
ccgggcagcgcggaggccttccagcaccgcgtgctggctcccgccccggccgtgtacgag
cccgcacccgacagcatgcagcccacggcgggcgtccagtacgccggccctcaggcttac
caggttcccaacgcggcccagaacagcgcgggccacgggcacacctccagccctgccgtc
catggggggccagcacaccaccacagcccagcggtacaggcccacgggcccgccgggatg
cacggccacacgcccgccccccaggccaccgcccagggacagcagttccagaggctcaag
gtggaagatgcgctgtcctacttggaccaggtcaaactgcagtttggcaaccaccctcaa
gtctacaatgacttcctggacatcatgaaggagttcaagtctcagagcatcgacaccccg
ggggtcatcagccgggtgtcgcagctcttcaagggccacccggacctcatcatgggcttc
aacaccttcctgccgccgggctacaagatcgaggtccagcacaacgagctggtgaacgtc
accacgccgggccagatccaccacatcaccccgcacggcatcacggtccagaacatcccc
atgccgggggcgcccgctctgccccaggcccctctccacgcccagctcctggccctcgcc
aaccccgccgcatcggcctccgccgccgccaccaccaccagcgccccggttttgctggca
cagccctccccggccaagatgagcaagacgcagcagtctcccgtcctgacgccgagcggc
cagagcaacccgtccatcccggtgtacacctccccgcgctcgccgcccctgcagctccac
ccgccctccggcgccacgcccgccgggccggccgcgcagaacaaccagcccgtggagttc
aaccacgccatcaactacgtcaacaagatcaagaaccgctttcagggccagcccgacatc
tacaaggccttcctggagatcctgcacacgtaccagaaggagcagcggaacgccaaagag
gccggggggaactacacgccggccctgacggagcaggaggtgtacgcccaggtggcccgg
ctcttcaagaaccaggaggacctgctgtcggagttcggccagttcctccccgacgccaac
agctctgtgcttttgagtaaaaccacggcggagaaggcggagtcggttcggaacgaccac
ggagccacggccaagaagctccagctcaacaacaagcagcggcccagccagaacggctgt
ccgatccgccggcacccggccgccaccaccacggcccccgtgaagccaaagcacaagtta
ctcaatctgaaagattcctccacggcagagtcaagcaagcatggagctggcacagaatct
ctgttcttcgagaaggtccgtaaggccttgcgtagtgcagaggtgtacgacaacttcctg
cgttgcctggtcctcttcaaccaggaggtgatctccagggctgagctggtccagctggtg
cttcccttcctgggaaaattcccggagctgttcaactggttcaagaacttcctgggatac
cgcgagatgtcgtcccacatcgagagctaccccaaggagcgggccacagagggcatcgcc
atggagatagactatgcttcctgcaagcggctgggctccagctaccgggcccttcccgag
agctacacccagcccaagtgtaccggccgcacgcctctctgcaaggaggttctgaatgac
acctgggtgtccttcccgtcctggtccgaggactcgacgttcgtgagctccaagaagacc
cagtacgaggagcacatctaccgctgtgaggacgagcgcttcgagctggacgtggtgctg
gagaccaacctggccaccatccgcgtgctggagctggtgcagcggaggctgtcgcgcatg
tccgccgaggagcaggccaagtaccgtctggacaacaccctggggggcacgtcggaggtg
gtccaccgcaaggccatccagaggatatacggggacaaggccgctgacatcctggacggc
atcaggaagaaccccgccatgtcggtgcccatcatcctcaagaggttaaagatcaaggag
gaggagtggcgggaagcccagcggggcttcaacaagatctggagggagcagaacgagaag
tactacctcaagtctctcgaccaccagggcatcaacttcaagcagaacgacaccaaggtg
ctgcgctccaagaccctgctgaacgagatcgagagcatctacgacgagcggcaggagcag
gcgtcggaggagaacgccgggccccccacgggcccccagctgaccctgtcctacgaggac
ccccagatcctggaggacgccgccgccctgatcatccaccacgtcaagcggcaggtgggc
atccagaaggaggacaagtacaagatcaagcaggtcatccaccacttcctgcccgacctg
ctgttcgcccagcgcggcgagctctcggacgccgaggaggaagaggaggacgaggacgag
gaggcggacgaagaggaggacgaggagagggaaggggagagggaccccgcggaggggccc
cggcccaagaagcacaacggcgttgctgcggtggcggcggcagccgcggcggtggcggcg
gggagcccgaccaagtccaagctgctcttcgggggcacggccgcccagaagctgcgggcg
acgggcgaggacgcctaccacctcttcctcgtcaacaacaactggtacatcttcctgcgg
ctgcaccagacgctgtgcgcccgcctgctgcggctctacggccaggcggagcggcagatc
caggacgagctccgggagagggactgggagcacgaggtgctgggcctcaagagggagaag
aacgacaacccggccgtccagctgcggctgaaggagcccatggacatcgaggtggaggac
tactactcggcgttcctggagatggtgcgcaacctgctggacgggaacatggaggcctcg
cagtacgaggactcactcagggagatgttcaccatccacgcctacaccgcgttcaccatg
gacaagctcatccagagcatcgtccgccagctccagcacctcgtgagcgatgacatctgc
gtccacgtgacggacctctacctggccgagagcaccggcggggccacgggggggccctcg
accgcgcaggccgccagcagctcggtcgaggccctgtaccagcgcaaggccgagcagctc
atgtccgacgagaactgcttcaagctgacgttcctgcggaaccggggtccggtccagctc
accgtggagctgctggactcggaggaggacaactccgatgaacccatggatgcggggcgc
tggtcggactacgtgggccgctacctggtctcagactcgacctcagcggagctacgggag
cacctggcacagaagcccgtcttcctgcccaggaacctgagacggatcaggaagtaccag
cagggccgggagcagctggacaaggaggcgggagagggggccaggaagtccctggacaag
gagaagatggcctgcatgttccagctcaactcctacaagatggtgtacgtcttcaagtcg
gaggactacatgtaccgccgcacggcgctgctccgcgcgcagcagtcacacgaccgggtg
agcacgcggctgcacaaccgcttccaggcgtgggtggacgcgtgggccaaggtgaacgtg
acgccggccatggccacggagacgggggcctggctgatgggcgaggaccgcgaggagttc
ctgccctgcgtcaccagccgcaacccggaggtgctgcacttcatgaacgtcaacaagtac
cgcgtcaagtaccccgcgcccagtccggcgccgtag
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integrated database retrieval system
