KEGG   Gadus morhua (Atlantic cod): 115551210
Entry
115551210         CDS       T10832                                 
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
gmh  Gadus morhua (Atlantic cod)
Pathway
gmh03030  DNA replication
gmh03410  Base excision repair
gmh03420  Nucleotide excision repair
gmh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    115551210 (rfc2)
   03410 Base excision repair
    115551210 (rfc2)
   03420 Nucleotide excision repair
    115551210 (rfc2)
   03430 Mismatch repair
    115551210 (rfc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gmh03032]
    115551210 (rfc2)
   03036 Chromosome and associated proteins [BR:gmh03036]
    115551210 (rfc2)
   03400 DNA repair and recombination proteins [BR:gmh03400]
    115551210 (rfc2)
DNA replication proteins [BR:gmh03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    115551210 (rfc2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    115551210 (rfc2)
Chromosome and associated proteins [BR:gmh03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    115551210 (rfc2)
DNA repair and recombination proteins [BR:gmh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     115551210 (rfc2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    115551210 (rfc2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 AAA_14 AAA_16 Viral_helicase1 Mg_chelatase AAA_24 AAA_11 Rad17 RCF1-5-like_lid MipZ RuvB_N AAA_19 DEAD nSTAND3 AAA_5 AAA_30 AAA_18 RNA_helicase ABC_tran AAA_25 MeaB AAA_28 SLFN-g3_helicase NTPase_1 AAA_assoc_2 AAA_2 AAA_23 MCM DNAX_ATPase_lid T2SSE DUF815 bpMoxR FtsK_SpoIIIE ATPase_2
Other DBs
NCBI-GeneID: 115551210
NCBI-ProteinID: XP_030222670
Ensembl: ENSGMOG00000011916
LinkDB
Position
1:22163806..22167004
AA seq 356 aa
MANMDVEMKNPTEPEPEPEPAPMKEEPAKSSSSGGSYDLPWVEKYRPLKLNQIVGNEETV
SRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGASMKDAVLELNASNERGIDVVR
NKIKMFAQQKVTLPKGRHKVIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKI
IEPIQSRCAVLRYSKLTDGQVLARLQQVVELEELSVCPDGLEAVIFTAQGDMRQALNNLQ
STHSGFGYIDSTNVFKVCDEPHPLLVKGMLGRCVEGDVDGAYKVVEELWALGYSPEDIMG
NIFRVCKTYQMAEYLKLEFIKEIGYTHMRIVEGVNSLLQMAGLLARLCSKTSPPAS
NT seq 1071 nt   +upstreamnt  +downstreamnt
atggcgaacatggatgtggagatgaagaacccgacagaaccagaaccagaaccagagccc
gctcccatgaaagaggagccggcgaagagctccagcagcggcggctcctacgacctgccc
tgggtggagaagtaccggccgctgaagctcaaccagatagtcggtaacgaggagacagtc
agccggctggaggtgttcgccagggagggaaacgtccccaacatcatcatcgcagggcct
ccggggaccgggaagaccaccagcatcctctgcctggccagagccctgctcggcgcgtcc
atgaaggacgcggtgctggagctcaacgcttctaatgagaggggtatcgacgtggtacgg
aacaagatcaagatgttcgcccagcagaaggtcacacttcccaaaggacgacacaaggtc
atcatcctggacgaggctgacagcatgacggacggggcacagcaggctctgagaaggatc
atggagatctactccaagacgacgcgcttcgccctggcctgcaacgcctccgacaagatc
atcgagcccatccagtcgcgctgcgccgtgctgcgctacagcaagctgacagacggccag
gtgctggcccgcctgcagcaggtggtggagctggaggagctctccgtctgccccgacggc
ctggaggccgtcatcttcaccgcccagggagacatgagacaggcactcaacaacctgcag
tcgacccactcgggcttcggctacatcgacagcaccaacgtgttcaaggtgtgtgacgag
ccccaccccctgctggtgaagggcatgctgggtcgctgcgtggagggggacgtggacggg
gcctacaaggtggtggaggagttgtgggcgctgggctactcccccgaggacatcatgggc
aacatcttcagggtctgcaagacctaccagatggccgagtacctgaagctggagttcatc
aaggagatcggctacacccacatgaggattgtggagggggtcaactcactgctgcagatg
gccggactcctggctcgcctgtgcagcaagaccagtcctccagcctcctag

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