Gadus morhua (Atlantic cod): 115552099
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Entry
115552099 CDS
T10832
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03020
RNA polymerase
gmh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115552099
09124 Replication and repair
03420 Nucleotide excision repair
115552099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115552099
03400 DNA repair and recombination proteins [BR:
gmh03400
]
115552099
Enzymes [BR:
gmh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115552099
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
115552099
DNA repair and recombination proteins [BR:
gmh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
115552099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
115552099
NCBI-ProteinID:
XP_030223730
Ensembl:
ENSGMOG00000016206
LinkDB
All DBs
Position
10:25071874..25086394
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDPDEETQYDEDEDEITSDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLLTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatccagatgaggagacccagtatgacgaagatgaagatgaaatcacctccgat
ttgtggcaggaagcctgttggattgttatcagctcgtactttgacgagaagggtctggtg
cgacagcagctggactcatttgatgagttcatccagatgtccgtccagaggatcgtggag
gacgccccgcccatcgacctgcaggctgaggcacagcacacctccggggaggtggaggat
ccgccacgctacctgctgaagtttgagcagatctacctgtccaagcccacccactgggag
agagacggcgccccatctcccatgatgcccaacgaagctcgccttcgcaacctcacgtac
tcggcccctctctacgtggacatcaccaaaaccatcatcaaggagggcgaggaccagctg
ctgacccagcaccagaagaccttcatcggaaaaatccccatcatgctccgctccacctac
tgcctgctcagcggcctgacggatcgtgatctgtgtgagctcaacgagtgtcccctggac
cccgggggctacttcatcatcaacggctccgagaaggtcctgatcgcccaggagaagatg
gccaccaacacagtgtatgtgtttgccaagaaggactccaagtacgcctacacaggggag
tgccggtcctgcctggagaactcctctcgccccaccagctccatctgggtcagcatgatg
gccagaggaggccagggagtaaagaagagcgccattgggcagaggatcgtgtccacactg
ccatacattcggcaggaagtgcccatcatcatcgtgttccgagcgctggggttcgtgtcc
gacagagacatcctggagcacatcatctacgacttcgacgaccccgagatgatggagatg
gtaaaaccctctctggatgaggcctttgtgatccaggagcagaatgtggctctcaacttc
atcggctccagaggtgccaagcccggggtcaccaaggagaggaggatcaagtatgccaag
gaggtgctgcagaaggaggtgctgccccatgtgggagtcagcgacttctgcgagaccaag
aaggcctacttcctggggtacatggttcacagacttctcttggctgcccttggaagaaga
gagctggatgacagggatcactatggcaacaagaggctggacctggccggcccgctattg
gctttccttttcagagggatgttcaagaaccttctgaaggagatccgcatctacgcccag
aagttcatcgaccgcgggaaggacttcaacctggagctggccatcaagactcgcatcatc
tcggacggcctcaagtactctctggccacaggcaactggggagacgtgaagaaggcccat
caggccagggcgggagtatcccaggtgttgaacaggttgaccttcgcctccacgctgtct
catctgcggcgcctcaactcgcccatcggaagggacggcaagctggccaagccccggcag
ctgcacaacaccctgtgggggatgatctgtcccgcagagacccccgaggggcacgctgta
ggcctggtgaagaacctggccctcatggcctacatctccgtgggctcccagccctctccc
atcctggagttcttggaggagtggagcatggagaacttggaggagatctccccggctgcc
attgcagacgccactaagatctttgtgaacggctgctgggtggggatccacaaggacccg
gagcagctgatgaacaccctgaggaagctccgcaggcagatggacatcatcgtctctgag
gtgtcgatgatccgggacatccgagagcgagagatccggatctacacggacgccggacgc
atctgtcggcccctgctgatcgtggagaaacagaagctgctgctgaagaggagacacatc
gaccagctcaaggagcgagagtacaacaactacagttggcaggacctggttgccagtggc
gtggtggagtacatcgacaccctggaggaggagacggtcatgctggccatgacccccgat
gacctccaggagaagggcgtggcctactgctccacctacacccactgtgagatccacccc
tccatgatcctgggagtctgcgcctccatcatccccttccccgatcacaaccagtctccc
aggaacacgtaccagtctgctatgggtaagcaggctatgggcgtgtacatcaccaacttc
cacgtgcgcatggacacactggcccatgtgctgtactacccccagaaacctctggtcacc
acccgctccatggagtacctgcgcttcagagaactgccagcaggcatcaactccatcgtg
gccatcgcttcctacacgggttacaaccaggaggactctgtcatcatgaacaggtctgcg
gtggaccggggattcttcaggtctgtgttctaccgctcctacaaagagcaggagtcgaag
aagggcttcgaccaggaggagatcttcgagaagcccacgcgggaaacctgccagggcatg
cgacacgccatctacgacaagctggacgacgacgggctgattgcgccgggcgtgcgcgtc
tccggcgaggacgtgatcatcggcaagacggtgacgctgccggagaacgacgacgagctg
gacagcaccaaccgccgctacaccaagcgcgactgcagcaccttcctgcgcaccagcgag
acgggcatcgtggaccaggtcatggtcaccctcaaccaggagggctacaagttctgcaag
atcagggtccgctccgtccgcatcccccagatcggagacaagtttgccagccgacacgga
cagaagggtacctgcggaatccagtaccgacaagaggatatgcccttcacgtgtgagggg
atcacgccagacatcatcatcaacccccacgctatcccctctcgaatgacagtcggtcac
ttgatcgagtgtctgcagggcaaggtttctgcaaacaagggcgagatcggcgacgccacg
ccgttcaacgacgcggtcaacgtgcagaaggtctccaacctgctgtccgagtacggctac
cacctgaggggcaacgaggttctctacaacggcttcaccggccgcaagctcacctcccag
atcttcatcgggcccacatactaccagcgcctcaagcacatggtggacgacaagatccac
tcccgggcccgagggcccgtccagatcctcaacagacagcccatggagggcagatcgcgt
gatggcggtctgcgtttcggtgagatggagcgtgattgtcagatcgcccacggcgccgcc
cagttcctgaaggagcgtctgttcgaggcgtccgacccctaccaggtgcacgtgtgcaac
ctgtgcggcctcatggccatcgccaacacgcgcacccacacctacgagtgtcgcggctgc
cgcaacaaaacccagatctcgctggtgcggatgccctatgcctgcaagctcctcttccag
gagctcatgtccatgagcatcgcccctcgcatgatgacctcctag
DBGET
integrated database retrieval system
