Gadus morhua (Atlantic cod): 115552445
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Entry
115552445 CDS
T10832
Name
(RefSeq) protocadherin alpha-C2-like isoform X1
KO
K16493
protocadherin alpha
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
115552445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gmh03036
]
115552445
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gmh04515
]
115552445
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
115552445
Cell adhesion molecules [BR:
gmh04515
]
Cadherins
Protocadherins
115552445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_FAT4_N
Cadherin_C_2
Ig_CLSTN
Motif
Other DBs
NCBI-GeneID:
115552445
NCBI-ProteinID:
XP_030224413
Ensembl:
ENSGMOG00000023528
LinkDB
All DBs
Position
10:complement(15220909..15417758)
Genome browser
AA seq
1014 aa
AA seq
DB search
MAVASRCSKSLKTNVPFYLYLMIFVFSGLTNAQIRYAIPEELESGAVVGDIVRDLGLDPR
TLSTRRMRITSDSGRRYFTINHKSGKLLVSERIDREAICEFGGTCFRNLEIVVESPLETH
NVAVEILDVNDNAPQFPRDEYQLEVPESAVTGTHFSLEGAQDADDGTNSVKLYRLSPNDH
LALDSIKPLSNSKHIELTLKKPFDREHKSSHQLILLAVDGGTPQRTGTAKINIRVLDSND
NVPAFDNSVYKVKLSENSPRGALVIRLNATDRDEGSNGEVFYSFSSYTPERVRQMFSLDT
NTGEIRVKNNIDYEETNSYEMYIQAMDRGPSPVAVHCKVVVEVLDVNDNIPDIVLSSLSS
PVREDARPDTGVALISVNDRDSGQNKRVTLEIMPGLPFRIKSFRNHYTVVTAAFLDRESI
SSYNITVIAVDGGSPPMSSRMTFKVEVADVNDNPPRFEQTSYTVYVPENNAPSASLCVVK
ASDEDAGENARITYTVLNDNNHGIPVASYVSIKPHTGEAFALQAFDFEKLREFHFQVKAQ
DNGVPHMSRVATIYVYIMDQNDHPPKIMHPPANGTRITETLMKNAEAGVLVTKVLAWDGD
AGENAWLLYVLDPTSTDVDLFKVHEHTGEIRTTRRVIEDNATSFMLTVHVRDHGLPALTS
IATLHVHVLELPPKVGPDPKRVTRPSRRLRFSNLTLYLIIALSATTFVFLVTIFVLAIVR
CHAYCTQPGSCCPCCVSKKAMAEAQSLAAVSAGGGGGGGGGGGGGGATGGLVAGQPNNNV
ALRRDLKVEPRYIEVRGNGSMTKTYCYKTCLTATSGSDTFMFYNTGRPHSGTWGSGYVTS
QSGHSQMFVRRLSMPDAAAIQPRAPNADWRYSASLRAGGVMQSSVHMEESAVMQGAQGVL
VQNWPTVSSAADGDGGEVSPPMGAGVDSNSWHFRYGPPGVPGGPPQHLKPGEVPPEAFII
PGSPAIISIRQNQGGEDDKSDFITFGKKEEAKKKKKKKKEKKDKKDKGKDDGDD
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggccgtggcttcgcgatgcagtaagagcctaaagacaaatgtgcctttttatttatat
ttgatgatttttgtattcagtggccttacaaatgcacaaatacggtacgctattccggag
gagttggagagcggtgctgtggtcggtgacattgtgcgggacttgggtttagacccgaga
acgctctccacacgacgaatgagaatcacctcggacagtggacggagatatttcaccatc
aatcacaaaagtggaaagctcttggtgagtgaacgcattgacagagaggcaatttgtgaa
ttcggcggcacctgctttcgaaacctggaaatagtcgttgaaagtccattggaaacgcac
aacgtagcagtggaaatccttgatgtaaatgataacgcgccacaattccccagagacgaa
tatcaacttgaggtaccagagtccgcggtcactggcacccatttcagcctcgagggcgca
caggatgcggatgacggtacgaactcggtgaaactgtaccgcctcagtccaaacgaccac
ctggcgctggactccatcaaacccctatcgaacagtaagcacattgaactcaccctcaag
aagccttttgaccgagagcataagtcttctcaccaactcatcctattagctgttgatggc
ggcacaccacagcgtactggcacagccaaaattaacatacgcgtgttggactccaatgac
aacgttcccgccttcgacaactctgtgtacaaagtgaaactgtccgagaactcccccagg
ggggccctggtgatccggttgaacgccacggaccgtgatgagggctccaacggggaggtg
ttctactctttcagtagctacacaccggagagagtcagacagatgttttctctggacacc
aacacaggtgagatcagggtgaagaacaacattgactatgaggagaccaactcatatgag
atgtacatccaggccatggaccgagggccgtctccggtggcggtccactgcaaggtggtg
gtggaggtcttggatgtgaatgacaacatcccagatatcgtgctgtcctctctctccagc
cccgtccgcgaagacgcccggcccgacaccggggtagcgctgatcagcgtcaacgaccgg
gactcgggacagaacaaacgggtgaccctggagatcatgcccggcctgcccttcaggatc
aaatccttccgcaaccactacaccgtcgtcaccgccgccttcctggacagggagtccatc
tcgtcctacaacatcacggtcatcgccgtcgacggaggctctccgcctatgtcctcccgc
atgacgttcaaagtggaggtggcggacgtgaatgacaacccgccccgcttcgagcagacg
tcgtacaccgtctacgtgccagaaaacaacgcgcccagcgcctccctgtgcgtggtcaag
gcctccgacgaggacgccggagagaacgcccgcatcacctacacggtcctcaacgacaac
aaccacggcatccccgtggccagctacgtcagcatcaagccccacacaggcgaggccttc
gccctgcaggccttcgactttgagaagctccgggagtttcacttccaggtcaaagcgcag
gacaacggcgtgccgcacatgtcccgcgtcgccaccatctacgtttacatcatggaccag
aacgaccacccgcccaagatcatgcacccgcccgccaacggcacgcgcatcactgagacg
ctgatgaagaacgcggaggccggcgtgctggtgaccaaggtgctggcctgggacggggac
gccggggagaacgcctggctgctgtacgtcctggaccccaccagcaccgacgtggacctg
ttcaaggtgcacgagcacacgggcgagatccggaccacgcggcgcgtcatcgaggacaac
gccacctccttcatgctgacggtgcacgtccgtgaccacggcctgccggcgctcacctcc
atcgccaccctgcacgtgcacgtcctggagctgccgcccaaggtggggcccgaccccaag
cgcgtcacccggcccagccgccgcctcaggttctccaacctcaccctctacctcatcatc
gccctgagtgccaccaccttcgtcttcctcgtcaccatcttcgtgctggccatcgtgcgt
tgccatgcctactgcacccagcccggctcctgctgcccctgctgcgtgtccaagaaggcc
atggcggaggcccagtccttggcggctgtttctgcaggtggaggaggaggaggaggtgga
ggaggaggaggaggcggggccacaggcggactggtggcaggacaacctaacaacaatgtg
gcgttgcggcgggacctcaaggtggagcctcgctacatcgaggtgcggggcaacggttcc
atgaccaagacgtactgctacaagacatgtctgaccgccacgtcgggcagcgacaccttc
atgttctacaacacgggccggcctcacagcgggacctggggctcgggctacgtcaccagc
cagagtggacacagccaaatgtttgtaaggagactcagtatgccagatgccgccgccatt
cagcccagggcgcctaatgcagactggcggtattcagcctccctgagagccggaggtgta
atgcagagctcggtgcacatggaggagtctgcggtgatgcagggagcccagggggtcctg
gtccagaactggccaacagtgtccagtgcagccgacggtgacgggggagaggtgtccccc
ccgatgggagcaggggtggacagcaacagctggcacttccgctacggtcctccgggggtc
cccggcgggcccccgcagcacctgaaacccggcgaggtgccccccgaggccttcatcatc
cccggctccccggccatcatctccatccggcagaaccagggcggagaggacgacaagagc
gacttcatcaccttcggcaagaaggaggaggccaagaagaagaagaagaagaagaaggag
aagaaggacaagaaggacaagggcaaggacgacggcgatgactag
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integrated database retrieval system
