KEGG   Gadus morhua (Atlantic cod): 115552524
Entry
115552524         CDS       T10832                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
gmh  Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gmh03041]
    115552524
Spliceosome [BR:gmh03041]
 Complex B
  Other components
   Complex B specific factors
    115552524
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 WD40_Gbeta ANAPC4_WD40 Beta-prop_EML LisH_TPL Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_ACSF4 Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_WDR41 Beta-prop_NWD2_C Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_BBS7 RMC1_N Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_WDR75_2nd Beta-prop_IP5PC_F LisH_WDR26 Beta-prop_RSE1_2nd Beta-prop_NOL10_N DUF7165 VPS8_N PROPPIN LisH WD_LRWD1 zf_topless LisH_PAC1 Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 115552524
NCBI-ProteinID: XP_030224564
Ensembl: ENSGMOG00000014336
LinkDB
Position
10:complement(1822369..1829817)
AA seq 513 aa
MSLEVESADVIRLIMQYLKENNLHRTLVTLQEESTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLVDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLSRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCICFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCVSFCKDSSQLLSASFDQTIRIHGLKSGKSLKEFRGHSSFVNEATFTPD
GHHIISASSDGTVKVWNVKTSECTSTFKSLGTSAGSDITVNNVALLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLISTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctttggaagtggaatccgcagacgttatccgtctgataatgcagtacctgaaggaa
aacaacctccaccggacactggtgacgctgcaggaggagtccacggtatcgctcaacacg
gtggacagcatagagagcttcgtggcggacatcaacagcggccactgggacacagtactg
caggccattcagtcgctcaaacttcccgataagacacttgtggacctctacgaacaggtg
gtgttggagctgatcgagctgagagagctgggcgcagcccgctccctcctcaggcagaca
gatcccatgatcatgctgaagcagacgcagccagagcgctacatacacctggagaatctg
ctggccaggtcgtacttcgacccccgagaggcctacccagacggcagtagtaaggagaag
aggcgagcggccatcgctcaggccctggctggggaggtcagcgtggtgcccccctcccgc
ctcatggccctgctcggacagtctctgaagtggcagcagcaccaggggctcctccctcca
gggatgaccatcgacttgttcagggggaaagcagccgtgaaggacgtggaggaggagcgc
ttccccacgcagctcagcagacacatcaagtttggacagaagtcccatgtggagtgttct
cgcttctctcctgacggccagtacctggtcaccgggtcagtggacggcttcatcgaggtg
tggaacttcaccaccggcaagatcagaaaggatctgaagtaccaggcgcaggataacttc
atgatgatggacgatgccgtgctgtgtatctgcttcagccgagacacagagatgctggca
acaggagcccaggacgggaagatcaaggtttggaagatccagagtgggcagtgcctgcgg
cggttcgagcgcgcccacagtaaaggtgtgacgtgtgtgagcttctgtaaggacagcagc
cagctgctcagtgcctccttcgaccagaccatcagaatccatggcctgaagtctggcaag
tctctcaaggagttcagaggtcactcgtccttcgtcaatgaggccaccttcacgccagac
ggacaccacatcatcagcgcctcatcggacggcaccgtcaaggtgtggaacgtgaagacc
tcggagtgcaccagtaccttcaagtctctggggacgtctgccggtagcgacatcaccgtg
aacaacgtggctctgctgcccaagaacccggagcacttcgtggtgtgcaaccgctccaac
accgtggtcatcatgaacatgcagggacagatcgtgaggagcttcagctctggtaagagg
gagggtggtgactttgtgtgctgtactctgtcgccgcgaggggagtggatctactgcgtg
ggagaggactttgtgctgtactgcttcagtaccgtgacgggcaaactggagagaacgctg
acggtccatgagaaagatgtgatcggcatcgcccaccacccccaccagaacctgatcagc
acctacagcgaagacggcctcctgaagctctggaagccctga

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