Gadus morhua (Atlantic cod): 115553340
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Entry
115553340 CDS
T10832
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115553340 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmh03041
]
115553340 (snrnp200)
Enzymes [BR:
gmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115553340 (snrnp200)
Spliceosome [BR:
gmh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115553340 (snrnp200)
Complex C
U5 SnRNP specific factors
115553340 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
115553340
NCBI-ProteinID:
XP_030225339
Ensembl:
ENSGMOG00000004881
LinkDB
All DBs
Position
11:26222341..26243225
Genome browser
AA seq
2135 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQMLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEANVGCSL
SANLVSGDMMTAKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLDILKTASDDRE
CENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEPEKERITGKMEADQELSKILY
QLQETEKEDIIREERSRRERVRKSRVDDLESMDVDHGESMTPRQLLDLEDLAFTQGSHFM
ANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLLGIDKLPKYAQAGFEGFKTLNR
IQSKLFKTSMETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINVDDFKIIYIAP
MRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGER
TYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLIGLSATLPNYEDVAT
CLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV
FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA
IHHAGMTRVDRTLTEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE
LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLADMLNA
EIVLGNVQNVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSADPLLERRRMDLIHTAANV
LDKNSLVKYDKRSGNFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSSE
FRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMVY
VTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIKKI
EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVELT
ITPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPLP
PQYFIRVASDHWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFETLYQN
KFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPME
ALAEQVFLDWHQKFMDLLNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRK
NVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHW
LGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHSIMKHSPTKPALVFV
PSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKINDATLKETLANGVGYLHEG
LSTGERRIVEQLFNSGAVQVVVASRSLCWGTNIAAHLVVVMDTQYYNGKIHAYVDYPIYD
VLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTK
TVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKCIS
IEDEVDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYNNIPIRHH
EDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEDILSKAVRLI
QACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTSEHIKRCTDKGVESIF
DIMEMEDVDRSGLLQLSDPQMADVARFCNRYPNIELSYEVVEKENIKSGGPVLVLVQLER
EEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVSPVMGVHN
YTLYFMSDAYMGCDQEYKFSVDVKEADSEGDSDSD
NT seq
6408 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtaaccgcacgtagcctgcagtatgagtacaaagcgaactccaacttggtg
ttgcaagcggatcgctcgctgatagaccggacccggcgagatgaacccaccggagaggtt
ctctccctggtggggaagctggagggcaccaagatgggagacaagtcgcaaaggaccaag
cctcaaatgctggaagagaggcgtgcaaagaggcgaaagagagacgaggacagacacgac
atcaacaaaatgaagggcttcaccctcctctctgagggcattgatgagatggtgggcatc
gtgtacaagcctaaaaccaaagaaaccagagagacgtacgaggtcctgctcagcttcatc
caggctgcgcttggcgaccagccacgtgacattctgtgcggagcggccgacgaagtcctg
gcggtgctgaagaacgagaagatgcgggacaaggagaggcgccgggaggtggagcagctt
ctggggccggccgacgacacgcgctaccacgtgctggtcaacctgggcaagaagatctcc
gactacgggggcgacaaggagctgcagaacatggatgacaacatcgacgagacgtacggc
gtgaacgtccagtttgagtccgacgaggaggaaggggatgaggaccagttcggggaggtg
cgtgacgagcactcggacgaggacagcgaaggagaggaggccaacgtgggctgctcgctc
tctgccaacctcgtctccggcgacatgatgacggccaagaagaaggacctgcatcctcgc
gacatcgacgccttctggctccagcggcagctcagccgcttctacgacgacgccatcgtc
tcccaaaagaaagcggacgaagtcctggacatcctcaagaccgccagcgacgacagggag
tgcgagaaccagctggtgctcctgttgggtttcaacacgtttgacttcatcaagatcctc
aggcagcatcgccgcatgatccagtactgcaccatgctggcgagcgcccagagcgagccg
gagaaggagcgcatcacagggaagatggaggcggaccaggagctgtccaagatcctgtac
cagctgcaggagaccgagaaggaggacatcattcgggaggagagatctcgccgcgagagg
gtcagaaagtcccgggtggacgatttggaatccatggacgttgaccacggagaatcgatg
actccccggcagctgttggatctagaggatctggccttcacccagggcagccacttcatg
gccaacaaaaggtgccagctgccagacggctccttccgcaagcagcgcaagggctacgaa
gaggtccacgtgcccgccctcaagcctaagccctttgcggacgacgaggtgcttctcggc
attgacaagctgccgaagtacgcccaggccgggtttgaagggttcaagacgctgaaccgc
atccagagcaagctgttcaagacctccatggagacggacgagaacctgctggtctgcgcc
cccactggtgcgggtaaaaccaacgtggctctgatggccatgctcagggagattggaaag
cacatcaacctggatgggaccatcaacgtggacgacttcaagatcatctacatcgctccc
atgcgctccctggtacaggagatggtgggaagcttcagcaagcgcttggccagctacggc
atcacggtctctgagctgaccggagaccaccagctgtgcaaggaggagatcaacgccacg
cagatcatcgtctgcaccccggagaagtgggacatcatcacgcgcaaggggggcgagcgc
acctacacccagctcgtgcgcctcatcatcatcgacgagatccacctgctgcacgacgac
cgaggcccggtgctagagtccctggtggcccgcaccatccgcaacgtggagctgacccag
gaggacgtgcgtctgatcggcctcagcgccacgctgcccaactacgaggacgtggccacc
tgcctgcgcgtggaccccgcgaagggcctcttctacttcgacaacagcttccgccccgtg
cccctggagcagacctacgtgggcatcacggagaagaaggccatcaagcgcttccagatc
atgaatgagatcgtctacgagaagatcatggagcacgccgggaagaaccaggtgctggtg
ttcgtccactcccgcaaggagacgggcaagacggccagggccatcagggacatgtgtctg
gagaaggacaccctggggctgttcctcagggagggctccgcctccaccgaggtgctgagg
actgaggccgagcagtgcaagaacctggagctgaaggacctgctgccctacggcttcgcc
atccaccacgccgggatgacccgcgtggaccgtaccctgacggaggacctgttcgccgac
aagcacatccaggtgctggtgtccacggccacgctggcctggggtgtcaacctgcccgcc
cacaccgtcatcatcaagggcacgcaagtgtacagcccggagaagggccgttggacggag
ctgggggccctggacatcctgcagatgctgggtcgtgccggccgcccccagtacgacacc
aagggggagggcatcctgatcacgtcccacggcgagctccagtactacctgtccctgctc
aaccagcagctgcccatcgagagccagatggtggccaagctggccgacatgctcaacgcc
gagatcgtgctgggcaacgtgcagaacgtcaaggacgcggtcaactggctgggctacacc
tacctgtacgtgcgcatgctgcgcaaccccacgctgtacggcgtctcccacgacgaccgc
agcgccgaccccctgctggagcgccgccgcatggacctgatccacaccgccgccaacgtg
ctggacaagaacagcctggtcaagtacgacaagcgctccgggaacttccaggtgacggac
ctgggccgcatcgccagccacttctacatcacccacgactccatccagacctacaaccag
ctgctgaagcccacgctcagcgagatcgagctcttccgcgtcttctccctgtcctccgag
ttcaggaacatcaccgtgagagaggaggagaagttggagctccagaagcttctggaaagg
gttcccattccagtcaaggagagcattgaagaacccagcgcaaagatcaacgtcctgctg
caggcctacatctcccagctcaaactggagggcttcgccctcatggccgacatggtgtac
gtcacccagagcgctggacgactgatgcgcgccatctttgagatcgtgttgagccggggc
tgggcgcagctcacggacaagaccatgaacctctgcaagatgatcgacaagaggatgtgg
cagtccatgtccccgctgcgtcagttcaggaagctgccggaggaagtgatcaaaaagatc
gagaagaagaacttccccttcgagcgcctctacgacctgaaccacaacgagatcggtgag
ctgatccgcatgcccaagatggggaagaccatccacaagtacgtccaccagttccccaag
ctggacctggccgtccacctgcagcccatcacacgctccaccctcaaagtggagctcacc
atcacccctgacttccagtgggacgacaagatccacggctcctccgaggccttctggatc
ctggtggaggacgtggacagcgaggtcatcctccaccacgagtacttcctgctcaaggcc
aagtacgcccaggacgagcacctggtcaccttcttcgtgcccgtgttcgagccgctgccg
ccgcagtacttcatccgcgtggcctcggaccactggctctcctgtgagacccagctcccg
gtgtcgttccgtcacctgatcctcccggagaagtaccccccacccacggagctgctggac
ctgcagccgctgcccgtcacggccctcaggaactccgccttcgagaccctgtaccagaac
aagttccccttcttcaaccccatccagacccaggtgttcaacgctgtgtacaacagcgac
gacaacgtgtttgtgggcgcccccaccggcagtgggaagaccatctgcgccgagttcgcc
attctgaggatgctgctgcacaacgccgagggtcgctgtgtgtacatcacccccatggag
gccctggccgagcaggtgttcctggactggcaccagaagttcatggacctcctgaacaag
aaggtggtgctgctgaccggcgagaccagcaccgacctgaagctcctggggaagggcgac
atcatcgtcagcacccccgacaagtgggacatcctgtcccggcgctggaagcagaggaag
aacgtccagaacgtcagcctcttcatcgtggacgagacgcacctgattggaggagagaac
gggcccgtgttggaggtcatctgctccaggatgcgctacatctcctcccagatcgagcgg
cccatccgcatcgtggccctcagctcctccctgtccaacgccaaggacgtggcccactgg
ctgggctgcagcaccacggccaccttcaacttccaccccaacgtcagacccgtacccctg
gagcttcacattcagggcttcaacgtgagccacacccagacgcgcctgctgtccatggcc
aagccggtgtaccactccatcatgaagcactccccgaccaagccggcgctggtcttcgtg
ccgtcccgccggcagacgcgcctcaccgccatcgacatcctgaccttctgcgcggccgac
gtcgtcccacagaggttcctgcactgcacggagaaggacctggcgcccttcctggagaag
atcaacgacgccaccctgaaggagacgctggccaacggcgtgggctacctgcacgagggc
ctgtccaccggcgagcggcgcatcgtggagcagctcttcaactctggtgcggtccaggtg
gtggtggcatcccgctcgctctgctggggcaccaacatcgccgcccacctggtcgtcgtc
atggatacccagtactacaacggcaagatccacgcatacgtggactaccccatctacgac
gtcctccagatggtgggcaaggccaaccggccgctgcaggacgacgagggccgctgtgtc
atcatgtgccagggctccaagaaggacttcttcaagaagttcctgtacgagccgctgccg
gtggagtcccacctggaccactgcctccacgaccacttcaacgccgagatcgtcaccaag
acggtggagaacaagcaggacgccgtggactacctgacctggacgttcctctaccgccgc
atgacccagaaccccaactactacaacctgcaaggcatgtcccatcgccacctgtcggac
cacctgtctgagcttgtggagaacaccctccacgacctggagcagtccaagtgcatcagc
atcgaggacgaggtcgacgtggcgccgctcaatctgggcatgatcgccgcctactactac
atcaactacaccaccatcgagttgttcagcatgtccctgaacgccaagacgaagatccgc
gggctgatcgagatcatctccaacgccgccgagtacaacaacattcccatcaggcaccac
gaggacactctgctgcgccagctggcccagaaggtgccccacaaactaaacaaccccaag
ttcaacgacccccacgtcaagaccaacctgctgctgcaggcccatctgtccaggatgcag
ctcagcgcagagctgcagtccgacaccgaggacatcctgagcaaggcggtgcgtctgatc
caggcctgcgtggacgtgctgtccagtaacggctggctgagccccgccctggcagccatg
gagctggcccagatggtcacccaggccatgtggtccaaggactcgtacctcaagcagctg
ccctacttcacctccgagcacatcaagagatgcaccgacaagggcgtggagagcatcttc
gacatcatggagatggaggacgtggaccgcagcggcctgctgcagctctcagacccccag
atggccgacgtggcccgcttctgcaaccgctaccccaacatcgagctgtcctacgaggtg
gtggagaaggagaacatcaagagcggtggaccagttcttgtcctggttcagctggagagg
gaggaggaggtcactggacctgtcatcgcgccgctcttcccccagaaacgcgaggagggc
tggtgggtggtgatcggagaccccaagtccaacagtctcatctccatcaagaggctcacg
ctccagcagaaagcaaaggtcaagctggactttgtctcgccggtgatgggcgtccacaac
tacacgctgtacttcatgagcgacgcctacatgggctgtgaccaggagtataagttcagc
gtggacgtgaaggaggcggacagcgagggagacagcgactctgactag
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integrated database retrieval system
