Gadus morhua (Atlantic cod): 115553399
Help
Entry
115553399 CDS
T10832
Name
(RefSeq) embryonic polyadenylate-binding protein-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03015
mRNA surveillance pathway
gmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115553399
09123 Folding, sorting and degradation
03018 RNA degradation
115553399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115553399
03041 Spliceosome [BR:
gmh03041
]
115553399
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115553399
mRNA cycle factors
Stress granule specific factors
115553399
Spliceosome [BR:
gmh03041
]
Complex C
Other components
Complex C specific factors
115553399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_Nup35
RRM_occluded
RRM_3
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
115553399
NCBI-ProteinID:
XP_030225443
Ensembl:
ENSGMOG00000004437
LinkDB
All DBs
Position
1:16237165..16244202
Genome browser
AA seq
649 aa
AA seq
DB search
MNANGPAYPLASLYVGDLHSDVTEAMLYQKFSPAGPIMSIRVCRDLITRRSLGYAYINFQ
QPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNMDDSIDNKALYDTFS
AFGNILSCKVVCDEKGSKGYGFVHFETQEAANRAIETINGMLLNDRKVQEAGSELDMFKR
KGHFLGEKCQLSLSRFVGHFKSRKERESEFGAKAMKFTNVYIKNFGEEYTDEKLKELFSK
FGKTLSVRVMKDERGRSRGFGFVNYGNHMDAQKAVEEMNGKDLTGKILYVGRAQKRTERQ
GELKRKFDQIKQDRIQRYQGVNLYVKNLDDTINDERLRKEFSPYGTITSAKVMTDGCQSK
GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERKAILTNKYLQRLSTVRSMP
SPIIDSYQQTGYYVSTVPQPPSRSFYNPSPVSGIRAAPRWTTQPPRAQGPYSPQLVGAAI
PRRTATPIATVRQASTQVPNVKYQKTTNIGTQTMGGRNDFAARGGQYKYCPSIRNTMQVI
TVPVSMARLQAVPISSMEPAVQIRGQEPLTASMLASAPPMDQKQLLGERLYPLIQALHPI
LAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAQECSSK
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctaatggaccagcctaccctctagcttcactgtatgtaggggacctacattct
gacgtgacagaggccatgctgtaccagaagttctcacctgcagggccaatcatgtcgatt
cgggtgtgccgcgacctcatcacacgccgatctctaggatatgcatacataaatttccag
caaccagctgatgctgagtgtgccttggatacaatgaactatgaagtgatcaagggtcgt
cccatcagaataatgtggtctcagcgggacccaggactgaggaaatcgggtgtgggaaat
gtgttcatcaaaaacatggatgattccattgacaacaaggccctgtatgacacattctca
gcctttgggaatattttgtcctgcaaggttgtttgtgacgagaaaggctcaaaaggctat
ggctttgtccactttgagacacaagaggcagcaaaccgtgccatagaaaccataaatggg
atgcttttgaatgatcgcaaagttcaagaggcagggagtgagttggacatgttcaagcga
aagggccatttcctgggtgaaaaatgtcagttatccctgagtagatttgtgggccacttc
aagtcccggaaggaaagggagagtgagtttggggccaaagccatgaagttcaccaatgtc
tacatcaaaaacttcggggaagaatacactgatgaaaaactcaaggaacttttctctaag
tttggtaagaccctcagtgtgagagtgatgaaggatgagaggggccgttcccgtggattt
ggctttgtcaactatgggaaccacatggacgctcaaaaggcagttgaggagatgaacgga
aaagatctgactgggaaaatcctttacgttggtcgagcacagaagaggacagagcgacag
ggagaactcaagcgcaaatttgaccagattaaacaggaccgcatacagcgctaccaggga
gtgaatctgtacgtgaagaacctggatgacacgattaatgatgagagactcagaaaggag
ttttccccttacgggactattaccagtgccaaggttatgacggatggatgccagagcaag
ggctttggctttgtgtgtttctcatcacctgaagaagcaaccaaagcggtaactgagatg
aacgggcgtattgttgcaaccaagccgctgtacgttgcactggctcaacgcaaggaggag
cgcaaagccatcctcaccaacaagtacctgcagagactgtccaccgtcaggtccatgcca
agccccatcattgactcgtaccagcagaccggctactatgtctctactgtgccacagcct
cctagccgctcattctacaaccccagtccggtcagtggaatcagagctgcgcctcgctgg
accacacagccacctagagctcaaggtccttactctccccagctggtgggagcagccatt
cctaggcgtacggccacacccattgcaacggtcaggcaggcttccacccaagttcctaac
gtgaagtaccaaaaaacaactaatattggaacccagacaatgggcggccggaatgacttt
gctgccagaggcggccagtacaagtactgcccatccattaggaataccatgcaggtcatt
actgtccctgtgtctatggcaagactgcaggccgtccctatatcttcaatggagcctgct
gtgcaaatcagaggccaggagcctctcaccgcctcaatgttggcctccgctcctcccatg
gaccagaaacagcttctgggtgagcggttgtacccgctgatccaggcacttcaccccatt
ctcgctgggaaaatcactgggatgctgctggagattgataactcggagctgcttcacatg
ctggagtcccccgagtcgctgcactctaaggtggaggaggcggtcgctgtgcttcaggct
caccaagcacaagaatgctcttccaagtaa
DBGET
integrated database retrieval system
