Gadus morhua (Atlantic cod): 115553418
Help
Entry
115553418 CDS
T10832
Name
(RefSeq) brevican core protein-like isoform X1
KO
K06795
brevican
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gmh00535
]
115553418
00536 Glycosaminoglycan binding proteins [BR:
gmh00536
]
115553418
04091 Lectins [BR:
gmh04091
]
115553418
Proteoglycans [BR:
gmh00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
115553418
Glycosaminoglycan binding proteins [BR:
gmh00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
115553418
Lectins [BR:
gmh04091
]
C-Type lectins
Lecticans
115553418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
V-set
Sushi
ig
hEGF
EGF
Defensin_propep
EGF_2
Motif
Other DBs
NCBI-GeneID:
115553418
NCBI-ProteinID:
XP_030225487
Ensembl:
ENSGMOG00000003832
LinkDB
All DBs
Position
11:complement(11892380..11910468)
Genome browser
AA seq
1312 aa
AA seq
DB search
MQTNTRMMEMRLGVILGAIWLLALPATSTPIQESDDSKLLQVTIPTPPQVSATLGGSLTL
PCLVSLSQPPHTPSTSGRRAVLSVPRVKWSVLSEGRDTEILVARGDRVKVSEVYRGRASL
LSYAVSPADLSLQLDAMGYNDTGFYRCEVQQGLEDAHDAVQVKVKGVVFHYRDASSRYAF
TFDQALDACEEIGARVATPEQLLAAYRSGYEQCDAGWLSDQSVRYPIQMPREGCFGDMDG
QPGVRNYGLLEPDELYDVYCYVENIEGEVFHGSAPQRFTLWEAKAFCQDQWTELATTAQL
YAAWNDGLHHCSPGWLADGSVRYPIVVPRERCGGGEPGVRTVYRFSNQTGFPEPHTQQDV
YCFRSNNGPHTDSPHTFQATEPHEVEDHDLDDPLEEVIASKGTFQEQNPAGRPSGPESQS
PSPGEEYLTVSRDPTEEHHPSATVPSQIEPPAVASSYPASYHPSPEEHPLTTPPLPSTHQ
YLGGDGTPTYGPSLETDGDVTTTHTDGDVTTTHTDEDMTTLHTDEDVTTHEADEDMTTLH
TDEDMTTPHTDGDVTTHNADGDVTTLHTDEGVTTHEADGDVTTLHTDEDVTTHDADGDVT
THEADGDVTTVHTDGDVTAVEAEGDVTPVTEESPSLPVSLEESDSTSPGDTSEPTATPDH
FENTPETATVATALAIGAPDATETHNTETQGHGADEESGEEEEDHHTLADIHQEHVSEAH
TPSPLPPLLSGPTTAEHPLTEEGGSEEEPLSSRPDESAVPLGSSHDQTPEESSGSAAQDS
TPQPGPENHFTTLHYISAMGLTSGLSGSLSPSAGGVEDSSQHESGFTQTPEGGVVLGRVQ
DMEQEVLSERVEVLLGGEQDPLKEAVEHSSGGEGSAEVSGGALGESSGMEPEEGSLMEEQ
TPVAVTDGGGGASETTDSEESFTESSVTLLPDDLTLTSEAAFTGRSPTPTAPQETRSDVE
YSAEPPVTVETGLADDITDEDHEEDATMMMDSTSLEQRHSETPSPRPIDAYYAGWTAEDV
KEEVEQEESYTHSASPTTRRDDGDIDHCVEDSCLNGGTCVDREPRVCVCLPSYGGNLCQT
DLNACDMGWEKFQGVCYRHFSKRQGWEVAEQHCRMLGANLVSIMSPEEQDYVNGIRPLPP
PYRGDKYKEYQWIGLNDRTIEGDFRWSDGNPLLYENWYRGQPDSYFLSGEDCGVIVWHEG
GQWSDAPCNYHLSYTCKKGPSSCGAPPEVLNAKVFGKERSRYETHAMVRYYCTEGFLQRF
DPVIKCLISGQWEGPQITCTEHSEQLVPNQKPLEGYSALSGAPADLSDHHSE
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgaacacccgaatgatggagatgaggctgggtgtgattctgggggccatctgg
ctcctcgcccttccagccacctccactcccatccaggagtcagacgactccaagctgctg
caggtgaccatccccacccccccgcaggtgtctgccaccctgggggggtccctcaccctg
ccctgcctggtctccctctcccagcccccccacacgccctccacctccggccggcgcgcc
gtgctttcggtgccgcgcgtcaagtggagcgtgctctctgagggccgcgacaccgagatc
ctggtcgcccgtggcgaccgcgtcaaggtgagcgaggtgtaccggggccgggcgtcgctg
ctcagctacgcggtgtcccccgccgacctcagcctgcagctggacgccatgggctacaac
gacacgggcttctaccgctgcgaggtgcagcagggcctggaggacgcccacgatgccgtg
caggtcaaagtcaaaggtgtggtgttccactaccgcgacgcgtccagccgctacgccttc
accttcgaccaggccctggacgcctgtgaggagattggggctcgggtggccacgccggag
cagttgctggcggcgtaccgcagcggctacgagcagtgtgacgcgggctggctctcggac
cagtctgtcagataccccattcagatgcccagggagggctgctttggggacatggacggg
cagccaggagtcaggaactatgggctgctggagccagatgagctgtacgatgtgtactgc
tacgttgaaaatattgaaggggaggtgttccacggctccgccccccagcggttcacccta
tgggaggccaaggccttctgccaggaccagtggacggagttggccaccacggcccagctg
tacgcggcctggaacgacggcctccaccactgcagccccggctggctggccgacgggagc
gtgcgctaccccatcgtggtccctagggagcgctgtggcggcggggaacccggcgtccgc
accgtctatcgctttagcaaccaaacagggttccctgagccgcacacgcagcaagacgtc
tactgcttcagaagcaataacggcccccacaccgactccccccatacattccaggccact
gagccacatgaggttgaagaccatgaccttgacgaccctcttgaggaggtcatcgccagc
aaggggaccttccaagagcagaacccagcaggaaggccttctggaccagagtcccagagt
ccgtcgccgggtgaggagtacctcacagtgtccagggacccgaccgaagagcaccatcca
tctgccaccgtcccgtcacagattgaaccccctgcggtggcctccagctaccccgcgtcc
taccacccatcccctgaagaacaccccctaaccaccccccctcttccatcaactcatcaa
tacctggggggagatggaaccccaacctatggaccatccctagagactgatggggatgtg
accactacacacactgatggggatgtgaccactacacacactgatgaggatatgaccact
ctacacactgatgaggatgtgaccacacatgaggctgatgaggatatgaccactttacac
actgatgaggatatgaccactccacacactgatggggatgtgaccacacataatgctgat
ggggatgtgaccactctacacaccgatgagggtgtgactacacatgaggctgacggggat
gtgaccactctacacactgatgaggatgtgaccacgcatgatgctgatggggatgtgact
acacatgaggctgacggggatgtgaccactgtacatactgacggggatgtgaccgctgta
gaggctgaaggggatgtgacccctgtaactgaagaatccccatcgcttcctgtctccctc
gaggagtcggacagcacttcacctggagacacgtccgaacccacggcaactcccgaccac
tttgaaaacaccccggagaccgcaaccgtggcgacggcgctcgccatcggcgcaccggat
gcaaccgagacgcacaacaccgagacgcaaggacacggggccgacgaagagtcaggggaa
gaggaggaggaccaccacaccctcgccgacatacatcaggagcatgtgtctgaggcccac
acccccagcccgctgccccccctgctctctgggccaaccacagctgagcaccctctgaca
gaagagggggggtctgaagaggagcctctgagctcgcgccccgacgagagcgccgttccg
ctgggctcctcccacgaccagacgccggaggagagcagtggatccgcggcccaggacagc
actccgcagccagggccggagaaccacttcactaccctccactacatttccgccatgggt
ctgacatccgggctctctgggtctctgtcgccctctgctggtggcgtggaggatagcagc
cagcacgagtcgggcttcacccagacacctgaaggcggtgtggtgttgggacgggtccaa
gacatggagcaggaggtgttgagcgagagggtggaggtactcctcgggggggaacaggat
cctctgaaggaagctgtggaacacagctccggcggcgagggctcggccgaggtgtccggc
ggggcccttggggagagctccggcatggagcccgaggaggggtccctgatggaggaacaa
acgcccgtcgcagtcaccgacggaggaggcggagcctccgagacaactgactccgaggag
tcctttacggagtcctcggtcaccctcctccccgatgacctcaccctgacctctgaggcc
gcgttcacaggccgcagccccaccccaaccgcacctcaggagacccgctccgacgtggag
tacagcgcggagccgccggttacggtggaaactggcctcgccgatgacatcaccgatgag
gatcacgaggaggatgctaccatgatgatggactccacctctctggagcagcgtcacagc
gagacccccagcccccgccctatcgatgcgtactacgcagggtggacagcggaggacgta
aaggaggaggtggagcaggaagagagttacacacactcagcctcacccacaaccagacgt
gatgatggcgacatagatcattgtgtggaggattcgtgcctgaacggaggcacctgtgtg
gacagagagcccagggtgtgtgtgtgtctgcccagctatggaggaaacctgtgccaaaca
gacctgaatgcgtgtgatatgggctgggagaagttccagggcgtgtgctaccgccacttc
tccaagcggcagggctgggaggtggccgagcagcactgtcgcatgctgggggccaacctg
gtgtccatcatgagccccgaggagcaggactacgtcaacggtatccggcccttaccccca
ccctaccgtggggataagtataaagagtaccagtggatcggtctgaacgacagaaccatt
gagggagacttccgctggtcggatggaaaccctcttctgtatgagaactggtaccggggc
cagcccgacagctacttcctgtctggggaggactgcggtgtgatcgtgtggcatgagggc
ggccaatggagtgacgcgccatgcaactaccacctctcctacacctgcaagaagggcccc
tcctcctgcggcgcccccccggaggtgctcaacgccaaggtgtttgggaaggagcggtcg
cgctacgagacccacgccatggtccgctactactgcacagagggcttcctgcagaggttt
gaccccgtcatcaagtgcctgatcagcgggcagtgggaggggcctcagattacctgcaca
gaacactccgaacaacttgtgccaaatcaaaaacccctagaaggctacagtgctctgagt
ggtgcaccagcagatttaagcgaccaccattcagagtga
DBGET
integrated database retrieval system
