Gadus morhua (Atlantic cod): 115553815
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Entry
115553815 CDS
T10832
Symbol
pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03015
mRNA surveillance pathway
gmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115553815 (pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
115553815 (pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115553815 (pabpc1)
03041 Spliceosome [BR:
gmh03041
]
115553815 (pabpc1)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
115553815 (pabpc1)
mRNA cycle factors
Stress granule specific factors
115553815 (pabpc1)
Spliceosome [BR:
gmh03041
]
Complex C
Other components
Complex C specific factors
115553815 (pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_5
RRM_3
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
115553815
NCBI-ProteinID:
XP_030226202
Ensembl:
ENSGMOG00000013448
LinkDB
All DBs
Position
11:13862657..13868715
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLREMFNAYGAGPALSIRVMTDDGGKSKGFGFISF
ERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYV
KNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV
ATKPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQN
RAAYYSANQLAQLRPSPRWATQGVRPQHFQNMPNAMRPSAPRPQTFNAMRPTTAQVPRMM
TSQRMPTQALGQRPAGASAAGAAPVRAMPQYKYAPGVRNPQQHMASQPQIPMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSA
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagcgcgcccagttaccccatggcctcgctgtacgtgggagacttgcaccag
gacgtcacggaggccatgctgtacgagaaattcagcccggccgggcctatcctctcaatc
agagtatgcagggacatgatcactcggcgttcccttggttatgcgtacgtcaacttccag
cagccggccgatgccgagcgtgccctggacaccatgaactttgatgtgatcaagggtaga
ccccttcgcattatgtggtcccagcgtgatccctcgctgagaaagagcggggtgggcaac
atcttcatcaagaacctggacaagtccattgacaacaaggctctttacgatacattctct
gccttcggcaatatcctgtcctgtaaggtggtatgtgatgaaaatggctcaaagggttac
ggctttgtgcactttgagacccatgaggcggcagagcgtgccattgagaaaatgaatggc
atgttacttaatgacagaaaagtgtttgtcggacgattcaaatcccgaaaagagagggag
gctgagctgggagcacgcgctagagagttcacaaatgtttacatcaagaactttggagag
gacatggacgacgagaagctgagggagatgtttaacgcatatggcgctggaccggccctc
agcatccgggttatgaccgacgacggagggaagtccaaaggatttggcttcatcagcttt
gaaaggcatgaggatgcacagaaggctgtggatgacatgaacggcaaagagctcaatggt
agacaggtttacgtgggtcgtgcgcagaagaagggcgaacgtcagaatgaactcaaacgc
aagtttgagcagatgaagcaggaccgcatgaccagataccagggtgtcaatctctacgtc
aaaaatctggatgacggtctggatgatgagcgtctgcgcaaagagttctctccctttgga
accataaccagtgccaaggtgatgatggaaggtggccgcagcaagggcttcggcttcgtc
tgcttctcctccccggaggaggccaccaaggccgtcacggagatgaacggtcgcatcgtg
gccaccaagccactgtatgtggctctggcccaacgcaaggaggagcgccaggcccacctc
accaaccagtacatgcagcgcatggccaccgtccgcgccgtgcccaaccccgtgctcaac
ccctaccagccagccccgccctcgggctacttcatggccgctatcccccaggctcagaac
cgtgctgcttactattctgccaaccagctggcccagctccgccccagcccccgctgggca
acgcagggtgtgcgtccccaacacttccagaacatgcccaacgccatgcgcccgtccgcc
cccaggccccagacgttcaacgccatgcggcccaccacggcccaggtcccacgcatgatg
acctctcagcgcatgcccacccaggccctcggccagcgccctgccggtgcttcagcagca
ggggccgccccggtgcgggccatgccccagtacaagtacgcccccggggtgcgtaacccc
cagcagcacatggcctcccagccgcagatccccatgcagcagcctgctgtacatgtgcag
ggacaggagccactgactgcctccatgctggccgctgccccgcctcaggaacagaagcag
atgcttggtgagcgtctgttccctctgatccagaacatgcaccccagcctggctggcaag
atcaccggcatgctgctggaaatcgacaactctgagttgctccacatgctggagtccccc
gagtccctgcgctcaaaggtggacgaagctgtggctgtgctccaggcacaccaggctaag
gaagctgcccagaagtccacaaccccggctggggtacccagcgcctaa
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integrated database retrieval system
