Gadus morhua (Atlantic cod): 115553824
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Entry
115553824 CDS
T10832
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115553824 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115553824 (smarcc1)
03036 Chromosome and associated proteins [BR:
gmh03036
]
115553824 (smarcc1)
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115553824 (smarcc1)
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115553824 (smarcc1)
PBAF complex
115553824 (smarcc1)
GBAF(ncBAF) complex
115553824 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
BRCT
HEAT_GCN1
BRCT_2
Motif
Other DBs
NCBI-GeneID:
115553824
NCBI-ProteinID:
XP_030226217
Ensembl:
ENSGMOG00000015989
LinkDB
All DBs
Position
11:complement(12565810..12585489)
Genome browser
AA seq
1085 aa
AA seq
DB search
MATAATGAGGTGSSGPATGPVGGGAAVGRKKDGGPSSKFWESSETVSQLETVRLWIAKHY
KKHVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKSFLDLKAGGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKSLVQNNCLTRPTVFLSTDMEQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSPTQQEDEEWLRPVMRKDKQVLVHWGMSPDSYDTW
VAVGEVDGDVEDPPSAERPWKVHAKWVLDTDAYNEWMNEEDYEVDENKKPVSFRQRIFPR
EEESSRTPDRKERKANSAGKKRRRSPSPPTTPAESRKKGGKKGNPGAHWKRRSHRGGEED
DTEEDLSKDLDDSSTNPTLDETSGTKNDDMEDDSVLSGGKEDEEQSKAEVNRLMDSEDNV
TEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNP
QEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDSESRPLPMGPPPTPHFNVLADT
PSGLIPLHHRPPQIPPAQPIMNFSEKNKDKPTNMQNFGLRPDLYAKKNLKGKGPTSGREW
SEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLESTEATLGPLAY
QPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPAELVEAHVKKVQE
AARSTGKVDPAFGLESSGIAGTAPEEPEKTESQEAEKMDTDSDSQQGDKAESKDEAEKPS
ESAEKRDDKAEGGEKVKKEAGEATERPEPEAEGPEVKAAGAADKDSEEAMETSSEKGKGK
EKEEKSREEEEDDEEEEEKGEGDEEEEEDEKKKLELDVGEGNIATAAAAALASAATKAKH
LAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQSFH
MEQLKYAEMKARQQMEQQAAAAAAQGQGPGHHGGPPPAMHSGYPPMGHHAIGPHHPAGPM
GPGPVQGRMMSGPPPGGPPPGSMPPMMGPRHPGAPNGMYPGPSGDGIVAVPTGPPAPPAA
RVADN
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactggagctggcggaacgggttcgagtggaccggcgaccggtcca
gtgggcggcggcgctgccgtgggtcgaaagaaggacgggggcccgtcttcgaaattctgg
gagagttctgaaacggtatctcagctggagacagttcggttgtggattgccaagcactac
aaaaagcatgtccagaacgactctccctcaagcaagtcgctggccggcctggtcgtccag
ttgctgcagttccaggaggatgcctttggtcgaagggtcaacaaccccgccctcaccaag
ttaccgaccaagagtttcctggatcttaaggccggtggtgctctttgtcacattttgggc
tcggtttacaagttcaagagtgagcagggctggcgtaggtttgatctccagaacccctcc
aggatggaccgtaacgtggagatgtttcttaacgtggagaagtccctggttcagaataac
tgtctgactcgaccaacggtcttcctgtccaccgacatggaacagaagcaagccaataag
ctcaaagacatcatcaagaggcaccagggctccatcactgaggataagtcgaaggcaacc
caccacatttacccctctcctacccagcaagaagatgaggagtggcttcgtccagtcatg
cgcaaggacaagcaagtgctggtgcactggggcatgtcccccgacagctatgacacctgg
gtggccgtcggcgaggtggacggagacgtggaggaccccccgagcgcagagagaccctgg
aaggtccacgccaagtgggtgctggacacagatgcctacaacgagtggatgaacgaggag
gactatgaggtggacgagaacaagaagcctgtcagcttccgccagaggatcttcccccgg
gaggaagaatcttcccgtacgcccgaccgcaaggagcgcaaggccaactctgccggcaag
aagagacgccgctctccctccccgccaaccacccctgcagagtcccgcaagaagggagga
aagaaggggaaccccggggctcactggaagcggcgcagccaccgcgggggggaggaggat
gacacggaggaggacctgagcaaagacctggacgactcctccaccaaccctaccctggac
gagaccagtggcaccaagaacgatgacatggaggacgactcagttctgtcaggtggaaag
gaggacgaggagcagagcaaggcggaggtcaaccgactgatggactccgaggacaacgtc
acagagcagactcaccacatcatcatccccagttacgctgcctggtttgactacaactgt
atccatgaaattgagagacgagccctgccagagtttttcaacgggaagaacaagtcgaaa
tccccagagatatacctggcctaccgcaacttcatgatcgacacgtaccgcctcaacccc
caggagtacctcacatcgacctcctgccgccgtaacctgacgggggacgtctgcgccgtc
atgagggtgcatgcgttcctggagcagtggggtctggtgaactaccaggtggactcagag
agccgcccgctccccatgggaccgcccccaaccccccacttcaacgtcctggccgacacc
ccctcgggacttatccccctccaccacagacccccgcagattcctccagctcagcccatc
atgaacttctcggagaagaacaaagacaaacccaccaatatgcagaactttggcctgcgc
cccgacctgtacgccaagaaaaacctcaagggcaagggacccacctccggccgggagtgg
agcgaacaggagaccctgctcctcctggaggcgctggagatgtacaaggacgactggaac
aaggtgtcggagcacgtgggctccaggacccaggacgagtgcatcctgcacttcctgcgg
ctgcccatcgaggacccctacctggagagcacggaggccaccctgggccccctggcctat
cagccggtgcccttcagccagtcggggaaccccgtcatgagcaccgtggccttcctggcc
tccgtggtggacccccgcgtggcctcggccgccgcaaaggcagcgctcgaggagttttcg
cgtgtgcgtgaggaggtgccggccgagctggtggaggcgcacgtgaagaaggtgcaggag
gcggccaggagcaccggcaaggtggaccccgccttcggcctggagagcagcggaatcgcc
ggcactgcccccgaggaaccggagaaaacagagagccaggaagcagagaagatggatacc
gactccgactcgcagcagggggataaggcggagtccaaggacgaggcggagaagcccagc
gagtccgccgagaagagggacgacaaggcggagggcggggagaaggtgaagaaggaggcg
ggcgaggccacggagcgcccggagccagaggccgaggggccggaggtcaaggccgccggc
gccgcagacaaagacagcgaggaggccatggagacgtcgtccgagaaggggaaggggaag
gagaaggaggagaagagtcgagaggaggaggaggacgatgaggaggaggaggagaagggc
gagggagatgaggaggaggaggaggatgagaagaagaagctggagctggatgtcggagag
gggaacatcgccaccgccgcggctgccgcgctggcctctgccgccaccaaagccaagcac
ctggccgcggttgaggagaggaagatcaagtccctggtggcgctgctggtggagactcag
atgaagaagctggagatcaagctgaggcactttgaggagctggagaccattatggaccgc
gagaaggaggccttggagctgcagaggcagcagctgctgacggagcggcagtccttccac
atggagcagctcaagtacgctgagatgaaggcccgccagcagatggagcagcaggctgca
gccgccgccgctcagggccagggccccgggcaccacgggggacccccgcccgccatgcac
tccggatacccccccatgggccatcacgccatcggcccccaccaccctgcaggaccaatg
ggaccagggcccgtccaagggcgtatgatgtccgggcccccacctggcggccccccacca
ggcagcatgccacccatgatgggcccccggcacccaggtgcacccaatggcatgtatcca
ggaccgtcgggtgatgggatagtggcagtccccacaggtcctccagcgccccctgctgca
cgggtggcagataactag
DBGET
integrated database retrieval system
