Gadus morhua (Atlantic cod): 115553865
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Entry
115553865 CDS
T10832
Symbol
col14a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain
KO
K08133
collagen type XIV alpha
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gmh00535
]
115553865 (col14a1)
Proteoglycans [BR:
gmh00535
]
Extracellular matrix (ECM) proteoglycans
Others
115553865 (col14a1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
VWA_3
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
115553865
NCBI-ProteinID:
XP_030226248
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All DBs
Position
11:complement(23109686..23220881)
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AA seq
1879 aa
AA seq
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MRALRFAVLLLTAFIVPGQGQNLELEQNLVPSPRRLRFKVINSNKLHILWKEPKGAFDKY
KFLYNYLPGGHPREIDVPKSESKVIITDYNPAKDYIVHVIAVKGSQQSKPLQGTHKAEQT
DSDKGGETQPQRLRETDAPPDEANEISGVDPFVCHTEAVADIVILVDGSWSIGRINFRLV
RLFLENLVNAFDIGIDKTRIGLAQYSGDPRIEWHLNAYTTKDTVIDAVKNLPYKGGNTLT
GLALTYILENSFKPESGSRPGVPKIGILITDGKSQDDVVPPAESLRDAGVELFAVGVKNA
DENELQSIASEPDEGHVYNVADFSIMSSIVEGLTKIVCEQVQHQDKEIKTKLPLEPIEQP
ETGAPSDFLASEVTANSFRVTWSPAPGRVEKYRVVYYPAQGGRPDELVVTVVESSVLLEH
LSSQTLYEVAVFAVYATAASEALRGSADTLVLATGSRLELLDMSPSAMRAALSAVAGASG
YMLLYAPLTGEGDAEEKELKVSEAITELELEGLIPDTEYSVTVNALYGEEASDPCHSAPP
SNLQFSEITYNSARINWSPPXGVKGSRISWVKKADGLVEREVCVGPVSSYDIGYLTSLME
YSARRVALYDEGQSEVPHDGFTTIPVPGPLGPEASDVSEDSMRVSWDHSANDVVLYKLSW
ALRLRGGYAKEVILSGSVDSYALTGLRPSTEYEAMLTAVFKDKSESDAVAVMATTLARTT
TIAPTTAAPRHAPRNLQVGERTTHSLEASWELEDPLVEGYRVSYASPERAHSPEVVFLPA
GSSSVLLQPLVPDTWYKVTLTPLYADGHDGVSAARAGATLPLSSPSNLRVSEEWYNRFRL
TWDPPTSPPTGYRVVYQPMTAPAPALDTVVGANVNSVVVPNLQSGTEYSVQVSASFPTTH
SEPVLGTAKTLFLGVSGLSTYQVRPNSMCVQWQPLSHVTMYRASIQSTLNRQRQEVSLGG
GASRQCFHDLTPSSQYEISVHTRIRELEGPAVSVTDMTMPAPTEAPTPPPTTEAPPTIPP
AKECCKEAKADLVFLVDGSWSIGDENFLKITRFLYSTMGSLDIVGPDGTQVAIAQFSDDA
RTEFQLSSHGNKEALLEAIQRIRYKGGNTKTGRAIKHVKESIFTPDGGARRGVPKVLVVL
TDGRSQDDVNTVSKEMQVEGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLDAVKKI
EEQLITFVCEAATATCPSVLMSGNTMAGFRMMEKFGLVEKEYGAVPGVSLEPGSFNSFPC
YRLHRDALVSQPTKYLHPEGLPSDYTISMILRLLPETPQEPFALWEILNKEKEPLVGLIL
DNSEKTLTFFNYDYKGDFQTVTFEGPEIRKLFHGSFHKLHVTVGKTSARVVLDCSVVGEK
AISASGNITIDGLEVLGRMVRLRGTRENSAPFQLQMFDIMCSTSWANRDKCCELPALRVE
EQCPSMPHACTCSQDSKGPPGPSGPPGGPGIRGSRGDRGEPGGMGLQGPVGEGGPPGPQG
PPGSQGLTGRSIQGAPGLRGEKGERGGIGPPGTMGVPGGAGSPGRDGPPGGRGLPGKDGP
QGHQGPTGTLGVPGATGPPGPGGSAGSQGDQGVPGPAGTKGDKGERGDVQSQAVVRSIAR
QVCEQLIQSHLSRYNSILNQIPSQPAAAVRTVAGPPGEPGRRGLPGPQGDQGPSGRPGFP
GTNGQNGLAGERGLSGEKGERGSHGIGSQGPRGPPGAPGLPGEGRTGSQGPPGRPGSQGT
PGRQGSPGSGGPPGSAGYCDQNSCMGYNVGVQALPHGGYNPGAVAYNGGRRGAEEEEDDD
DDDEEDEDEEQDPYQHGYPPQYYPGYDPRGYRPRPRSEDVELRSPGVAQRFARHARGTGE
EVGGGDVVVTEESEEGGGA
NT seq
5640 nt
NT seq
+upstream
nt +downstream
nt
atgagggctctgaggttcgctgtgctgctgctcacggccttcatagtaccaggccagggc
cagaacctggagctggagcagaatctagtgccgtcccccaggaggttacggtttaaagtc
atcaactcaaacaagctccacatcttgtggaaggagccaaagggagccttcgacaaatac
aaattcctatacaactatttaccaggtggccatccgagagagattgatgtccccaaatcg
gagagcaaggtgatcataacggattacaacccggccaaggactacatcgtccacgtcatc
gctgtcaaaggcagccagcagagcaagccactgcagggcacacataaagctgagcagaca
gacagtgataaggggggagagacccagccccagaggctgagggagaccgacgccccacct
gatgaggccaatgagatctctggagtggacccgttcgtttgccacacggaggcggtcgct
gacatcgtcatcctggtggacggctcgtggagcatcggcaggatcaacttccggctggtg
cgcctgttcctggagaacctggtcaacgccttcgacatcggcatcgacaagacgcgcatc
ggtctggctcagtacagcggggaccccaggatagagtggcatctgaacgcctacaccacc
aaagacaccgtgatcgacgccgtgaagaatctgccctacaagggaggcaacacacttacc
ggcctggcgctgacctacattctggagaacagcttcaagcccgagtcaggatccagaccc
ggcgtcccgaagatcggcatcctgatcacggatggaaagtcccaggacgacgtggtaccc
cctgcggagagcctgcgagacgccggcgtggagctgtttgctgtcggtgtgaagaacgca
gacgagaacgagctgcagtccatcgcctcggagccggatgagggacacgtgtacaacgtg
gccgacttcagcatcatgagctccatcgtggaagggctcaccaagatcgtgtgtgagcag
gtgcagcaccaggacaaggagatcaagaccaaactccctctagagccgatagagcagcca
gagaccggcgctccctcggacttcctggcatccgaggtcacggccaacagcttccgggtc
acgtggagccccgcccccgggagggtggagaaataccgagtggtgtactacccggctcaa
ggagggagaccggacgagctggtggtgacggtggtggagagctccgtgctgctggagcac
ctgagctcccagacgctctacgaagtggccgtgttcgctgtctacgccaccgccgccagc
gaggccctgagggggtccgcagacacccttgtcctagcgacgggtagcaggctggagctg
ttggacatgagcccaagtgcgatgcgggcggcgctatcggcagtggcgggggccagcggc
tacatgctgctgtacgctcccctcaccggggagggggacgctgaggagaaggagctcaag
gtatcagaggccatcacagagcttgagctggagggtctgatcccggacacggagtactct
gtgacggtgaacgccctgtacggggaagaggccagcgacccgtgccactcagccccgccc
agcaatctgcagttctctgaaattacctacaattccgctcgcatcaactggagcccccca
nngggggtgaaggggtcccgcatctcttgggtcaagaaggcagacggactggtcgagaga
gaggtttgtgttggccctgtgagctcctacgacatcgggtacctgacctctctcatggag
tactctgctcgccgtgtcgccctgtacgacgagggccaatcggaagtccctcacgatggc
ttcacgaccattccggtccccgggcccctgggccctgaggccagtgacgtgtcagaggac
agcatgcgggtcagctgggaccactcagccaatgacgtggttctctacaagctatcctgg
gctctccgtttacgagggggctacgctaaggaggtgattttgagcggttcggttgacagc
tatgccctgaccggtctccgcccctccacggagtacgaagcgatgctaacggccgtgttc
aaagacaagtccgagagcgacgctgtggctgtcatggcaaccacactggccaggacaaca
acaattgctccgactaccgcagcaccccgccacgcgccaaggaaccttcaggtgggggag
aggaccacccacagcctggaggcctcctgggagctggaggaccccctggtggagggctac
agggtgtcctacgcatcccccgagcgcgcccactccccggaggtggtcttccttccagct
gggtccagcagtgtgctgctccagcctctggtccctgacacctggtacaaggtgaccctc
accccgctgtacgctgacggccacgacggcgtcagcgccgccagagcaggagccacgcta
ccgctctcatcgcctagcaacctgcgcgtttcagaggagtggtacaaccgcttcagactc
acctgggacccacccacctcccccccaacaggctaccgggtagtctaccagcccatgact
gccccagccccggctctggacacggtggtcggagcgaacgtcaactccgtggtggtcccc
aacctgcagagcgggacagagtactccgtccaagtgagcgcgtccttccccacgacccac
agcgagcccgtcctaggcaccgccaagaccttattcctgggggtgtctggcctgtccacg
taccaggtccgtcccaacagcatgtgtgtccaatggcagcctctgtcccatgtcaccatg
tacagagcatctattcagtccacgctcaatcgccagaggcaggaagtgagtcttgggggc
ggggcttctcgccagtgcttccacgacctcacccccagcagccaatacgagatcagcgtt
cacacccggatacgagagctggaggggccggccgtctccgtcaccgatatgacgatgcca
gctccgactgaggctccgactccacccccaactactgaggcccctcccaccatcccccct
gctaaggagtgttgtaaggaggcgaaggcggacctggtgttcctggtggatggctcctgg
tccatcggcgatgaaaacttcctgaagatcacccgcttcctgtacagcaccatgggctcc
ctagacatcgtcgggcctgacgggactcaggtggccattgcccagttcagtgacgacgca
cgcaccgagttccagctgagttcccatggtaacaaggaggcgctgctggaggccatccag
aggattagatacaagggaggaaacaccaagacaggccgcgccatcaagcacgtcaaggag
tccatcttcaccccggacggaggtgcgaggcggggggtccccaaggtgctggtggtcctg
accgatggccgttcccaggacgacgtcaacaccgtctccaaggagatgcaggtggaaggt
tacatcatctttgccatcggctttgcggacgcagactacggggagctggtgaacatcgcc
agcaagcccagcgacagacacgtcttcttcgtggatgacctggacgctgtgaagaagatc
gaggagcagctcatcacttttgtctgcgaggccgccacagccacttgtccttcggttctg
atgagtggaaacaccatggcaggtttccgcatgatggagaagttcggcctggtggagaag
gagtacggcgccgtaccgggcgtgtctctggagcccggctccttcaacagcttcccctgc
taccgactgcacagggacgccctggtgtcccagcccaccaagtatctccatccagagggc
ttgccatctgattacaccatctcaatgattcttcgcctgctccctgagacgccccaggag
ccctttgcattgtgggaaatcctcaacaaggagaaggagccgttggtgggactcattctg
gacaattctgagaagaccctgaccttcttcaactatgactacaaaggagacttccagacg
gtcacttttgaaggacctgaaatcaggaagctcttccatggcagcttccacaagctccac
gtgacggtgggcaagacgtcggcgcgggtggtgctggattgctccgtggtgggggagaaa
gccatcagcgcgtcggggaacatcaccatcgatggcctggaggttctagggaggatggtg
cggttgcgtggcacgcgagagaactctgctccgttccagctccagatgtttgacatcatg
tgcagcacgtcgtgggctaaccgagacaaatgctgtgagcttccagcattgagggtcgaa
gagcagtgtccctccatgccccatgcctgcacatgctcacaggacagcaaaggacctccc
ggaccctccgggccaccaggcggtccagggatccgggggtccagaggagacagaggagag
ccgggaggcatgggactccaaggaccagtgggtgaagggggccccccaggcccccaaggc
ccccccggctcccaaggcctcactggacgctccattcaaggggccccgggacttcgcggg
gaaaagggggagaggggaggaatcggaccacctggaacaatgggcgttccgggcggggcc
ggctcaccaggacgcgacggcccacctggaggaaggggtcttcccggtaaagacggaccc
cagggccaccaggggccaaccgggactctaggggtccccggagccacagggcccccagga
ccaggggggtctgctggatcacaaggagaccagggggttccgggtcctgctggtaccaaa
ggcgacaagggagagagaggtgatgtgcagtcccaggctgtggtgcgctccatcgcgcgc
caagtgtgtgagcagctcatccagagtcacctgtctcgctacaactccatcctcaaccag
atccccagccagccggcggcggccgtgcgcaccgtggcgggcccccccggggagccgggg
cgcaggggcctgccggggccccagggggaccaggggccctcgggccggccgggcttcccc
gggaccaacgggcagaacgggctcgcgggggagagaggactctcgggggagaagggagag
cgggggagtcacggcatcggatctcagggaccccgaggaccccctggagccccaggctta
ccaggcgagggccggacgggcagccagggaccccctggcaggccgggtagccagggcacc
ccggggagacagggctcgcctgggtccggtggaccaccggggtctgcggggtactgtgat
cagaactcctgcatggggtacaacgttggcgtccaagcgctaccgcacggcggctacaac
ccgggggccgtggcctacaacggcgggcggcgaggagccgaggaagaagaggacgacgac
gacgacgacgaggaagacgaggacgaggagcaagatccatatcagcacggctacccgccc
cagtactaccccgggtacgacccccgggggtaccggcccaggccccgctcagaggacgtg
gagctgaggtcgcccggggtcgcgcaacgctttgcccgccacgcccgcggaacgggggag
gaggtgggcggcggcgacgtcgtcgtcacggaggagagcgaggaggggggcggcgcgtag
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