Gadus morhua (Atlantic cod): 115553926
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Entry
115553926 CDS
T10832
Symbol
cnot3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115553926 (cnot3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115553926 (cnot3)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115553926 (cnot3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115553926 (cnot3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
LepA_C
Motif
Other DBs
NCBI-GeneID:
115553926
NCBI-ProteinID:
XP_030226331
Ensembl:
ENSGMOG00000005365
LinkDB
All DBs
Position
11:complement(6827515..6837677)
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AA seq
972 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVMTRKKKGDKEKQDRIEELKRLIERHRFHI
RMLETILRMLDNDSVQVDSVLKIKDDVEYYIDSSQDPDFEENEFLYDDLDLDDIPLVATS
PSGQGNIEDEMFLNSSSTPTSTTSSSPIPPSPAACTAVSSCNPPFAWDDSITLENSEDDK
KRGRSTDSEVSQSPVKNGTPSLLSSFSCSSTSGSSSSSSSLVSMASIVGGIPVVPTSNSL
IGSFSSAVQQHQHQMSQQLAQAANQQQQPSQSKPSAPSSNTPSPLSHPLLPVSAPIPIPT
APSLVAALPQPMPSSGSAPSSSCGLGLGLGLSKVGMTGTSSANQMSGLGLSGMPSALNTM
AGLISASTPTPYAQAAASGGLGLSSSSGLSSVPMESSPSIPASGSSGVTTNGSGTGLSLL
GSSPAHGSLTAGLLGLVPGQNVGPGSSQVTLPPVSAAPGGGMGMLGGSGANVGVVGGAVL
NAAPARPPSGLKQNGTTSYSAIVAESSTDSNLSTPSQSQGSQPSSLTSSTSQPMDNGPSL
ISSITLPPSSPSPSFSDSTPGGSSLLNGPHSYSQTPEVLKLPTDHRQMLMDCRVSAVAGE
PPGTTATNTRKRKQCQAPEALSSLKAMAERAALVSGLDGEIPNLHLTDRDIFSSSSAAPG
TPAAPQPSLSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESAWTHMPHPSDSERIRQYLM
RNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFH
TKYMMWFQRHEEPKTITDEFEQDGAHLPRAALLYSSTPPPPVKRKTRMHIFWEELLKIMC
LMATVKQSRGVV
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaattacaaggtgaaatcgatagatgtttgaaaaaagtagcagaa
ggtgtagagcagttcgaggatatttggcaaaagcttcacaatgcagccaatgctaaccag
aaggaaaaatacgaggcagacctcaaaaaagagattaaaaaactgcaacgactgcgagat
cagataaaaacatgggtggcctcaaatgagattaaagacaaaaggcaactagtcgaaaac
cggaaactcatagagacgcaaatggagcgctttaaggtggtggagcgggaaacaaaaaca
aaggcgtactctaaagaaggcttaggacttgcccagaaagtagatccagctcagagggaa
aaagaggaaacgggccagtggttaacgaatacgatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggagtctctctccgtgatgacgagaaaaaaaaagggtgacaaa
gagaagcaagatcgcatcgaagagcttaagaggttgatcgagcgccatcggttccacatt
cgcatgctggagaccatcctgcgaatgcttgacaatgactcggtacaagtggactctgtc
ctgaagatcaaagatgacgtggagtactacatcgactcttcccaggaccccgacttcgag
gagaacgagttcttgtacgatgatctagacctggacgacataccacttgtggccacgtct
ccatcggggcagggaaatattgaggatgagatgtttctcaactccagcagtacgcccact
tccaccacctcctcctcacccatccctccctccccggccgcctgcactgctgtaagttca
tgcaatcctccctttgcttgggacgattccatcactttggagaactctgaggacgacaaa
aaacgaggtcggtcgacagacagtgaagttagtcagtcgcctgtgaagaatggcactcct
tccctgttgtcttccttctcttgctcctccacctccggctcctcctcctcctcctcctcg
ttggtgtccatggcgagcattgtcggaggcattcccgtggtgcccacaagcaacagcctg
atcgggagcttcagcagcgctgtgcaacagcaccagcatcaaatgtcgcagcagctggcg
caggctgcaaaccaacagcaacagccatcgcaatccaagccctcggccccctccagcaac
acccccagcccgctcagccacccactcctaccggtctcggcccccatccccatccccacc
gcccccagcttagtggcggccctcccccaacccatgccgtcctcggggtccgctccctcc
tccagctgtggacttgggctgggcctgggtttgagcaaagtgggcatgacggggaccagc
agtgccaaccaaatgtccggtcttggcctgagcggcatgccgtcggcgctaaacacgatg
gccgggctcatttcggcgtccacccctaccccgtatgctcaggcagcggcgtcggggggc
ctgggtctgagcagcagcagcggcctgtccagtgttcccatggagagcagcccttccatc
cccgcctctggctccagtggagtcaccaccaatggctccggcacaggccttagtttgctg
ggctccagcccggcgcacggctctctcaccgcgggcctcctcggcctggtccccgggcag
aacgttggccccgggtcctcgcaggtgaccctccctcccgtcagcgccgctcctggcggg
ggcatgggcatgctgggaggcagcggtgccaacgtcggcgtggtcggaggagcggtgctc
aacgcggcccctgccagaccccccagtggactcaagcagaacggaaccacaagttacagc
gcaatagtagcagagagctccacagattccaatctaagcacaccgagccaatcacaaggc
agccagccttcgtcgctcacgtcctcgaccagtcaaccaatggacaacggccctagcctc
atcagctccatcaccctgccgcccagctctccctccccctccttctcggacagcacgccc
ggcggaagcagtcttctgaacggaccccactcctactcgcagacccccgaggtcctcaaa
ctccccacagaccaccgtcagatgctgatggactgccgggtatcggcagttgcgggagag
ccgcccgggaccacggccaccaacacacgcaaacgaaagcagtgtcaggctcctgaggct
ctcagctccctgaaggccatggccgagcgggcagcgctggtctcaggccttgacggagag
atccccaacctgcacctcacagatagagatatcttctctagttcctctgcagcccccggc
accccggcggccccccagccctccctgtcagaggtcagcatccccccgtcgctgggcgtg
tgccccctgggccccacgccgctccccaaagaccagctctaccagcaggccatgcaggag
tcggcctggacacacatgccccacccctcggactctgagagaatcaggcagtacctgatg
aggaacccgtgtcccacgctgcccttccaccaccagatgccgcctcaccactcagactcc
attgagttctaccagaggttgtccacggagacgctcttcttcatcttctactacctggag
ggcacgaaggctcagtacctgtctgcgaaggcgctgaagaagcagtcgtggaggttccac
accaagtacatgatgtggttccagaggcacgaggagcccaagacgatcaccgatgagttt
gaacaggatggggctcatcttccaagagcagctcttctctacagctcaacaccgccacca
ccagttaagagaaagacacgcatgcacattttttgggaggaactgctgaaaataatgtgc
ttaatggccacagtgaaacagagcaggggcgttgtgtag
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