Gadus morhua (Atlantic cod): 115554164
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Entry
115554164 CDS
T10832
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04137
Mitophagy - animal
gmh04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
115554164 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
115554164 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115554164 (vcp)
03009 Ribosome biogenesis [BR:
gmh03009
]
115554164 (vcp)
04131 Membrane trafficking [BR:
gmh04131
]
115554164 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gmh04147
]
115554164 (vcp)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
115554164 (vcp)
Ribosome biogenesis [BR:
gmh03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
115554164 (vcp)
Membrane trafficking [BR:
gmh04131
]
SNARE
SNARE associated proteins
Others
115554164 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
115554164 (vcp)
Exosome [BR:
gmh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
115554164 (vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
Vps4_C
RNA_helicase
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
115554164
NCBI-ProteinID:
XP_030226656
Ensembl:
ENSGMOG00000004938
LinkDB
All DBs
Position
11:29719768..29730158
Genome browser
AA seq
806 aa
AA seq
DB search
MASGSDSKNDDLSTAILKQKHRPNRLMVDESINEDNSVVSLSQTKMDELQLFRGDTVLMK
GKKRRETVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVIGIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHYEGEPIRREDEEDSLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDSTGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFKWALSQSNPSALRETVVEVPNISWEDIG
GLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNAGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRINILKAN
LRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPTGTTGG
TGPSQGSGGTGTGPVFNEDNDDDLYA
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggggagcgactccaaaaatgatgatctgtccactgcgatcctcaaacagaaa
cacaggcctaacaggcttatggtcgatgagtccattaatgaggacaacagtgtggtctcc
ctgtctcagaccaagatggacgaactgcagctgttccgtggagacacagtgttgatgaag
ggaaagaagaggagggagacggtgtgcatcgtcctgtccgacgacacctgctccgatgag
aagatccgcatgaacagggtggtccgtaacaacctgcgggtccgcctgggcgacgtcatc
ggcatccagccgtgtcccgatgtcaagtacggaaagaggatccatgttcttcccatcgac
gacaccgtagaggggatcactgggaacctgtttgaggtctacctgaagccgtacttcctg
gaggcctacaggcccatccgcaagggggacatcttcctggtgagaggaggcatgcgtgcg
gtcgagttcaaggtggtggagacggacccctctccctactgcattgttgccccggataca
gtcatccactacgagggcgagcccatcaggagagaggacgaggaggactccctgaacgag
gtcggctacgatgacatcggaggagtgaggaagcagctggctcagatcaaggagatggtg
gagcttcctctgaggcaccctgccctgttcaaggccataggagtcaagcccccccgtggc
atcctgctgtacggacccccaggaacaggaaagactctgatcgccagagccgtggccaat
gagacgggagccttcttcttcctcatcaacggccctgagatcatgagcaagctggcggga
gagagtgagagtaacctgaggaaggccttcgaggaggcggagaagaacgctccggccatc
atctttattgatgagctcgacgccatcgcccccaagagagagaagacgcacggcgaggtg
gagcggcgcatcgtgtcccagctgctgaccctcatggacggcctgaagcagagggcccac
gtcatcgtcatggcagccaccaacagacccaacagcattgaccccgccctgaggagattc
gggcgtttcgacagggaggtggacatcggcatccctgactccaccggcaggctggagatc
cttcagatccacaccaagaacatgaagctggccgacgacgtggacctggagcaggtggcc
aacgagacccacgggcacgtgggcgctgacctcgccgcgctgtgctcggaggccgccctg
caggccatcaggaagaagatggacctcatcgacctggaggacgagaccatcgacgccgag
gtcatgaactctctggccgtcaccatggacgacttcaagtgggccctcagccagagcaac
ccctccgcgctcagagagacggtggtggaggtccccaacatcagctgggaggacatcgga
ggactggacgacgtcaagagggagctgcaggagctggtgcagtaccccgtggagcaccca
gacaagttcctgaagttcggcatgaccccgtccaagggcgtgctcttctacggacccccg
ggttgcggtaagaccctgctggccaaggccatcgccaacgagtgccaggccaacttcatc
tccatcaaggggcccgagctgctcaccatgtggttcggagagtccgaggccaacgtcagg
gagatcttcgacaaggctcgccaggccgccccctgcgtgctgttcttcgacgagctggac
tccatagccaaggcccgcggcggcaacgccggggacgggggcggcgccgccgaccgcgtc
atcaaccagatcctgacggagatggacggcatgtccagcaagaagaacgtcttcatcatc
ggcgccaccaacagaccggacatcatcgacccggccatcctgaggcccggtcgcctggac
cagctgatctacatccccctgcccgacgagaagagcaggatcaacatcctgaaggccaac
ctgcgcaagagccccatcagcaaggacgtggacctggacttcctggccaagatgaccaac
ggcttctccggcgccgacctcacagagatctgccagcgggcgtgcaaactggccatcagg
gagagcatcgagaacgagatccgcagggagcgcgagaggcagacgaacccctccgccatg
gaggtggaggaggacgacccggtccctgagatcaggaaggaccacttcgaggaggccatg
cgcttcgcccgccgctccgtcagcgacaacgacatccgcaaatacgagatgttcgcccag
acgctgcagcagagccgcggcttcggcagcttcaggtttcccaccggcaccacggggggc
acggggcccagccagggctccggaggcaccggcaccggccccgtcttcaacgaggacaat
gacgatgacctgtacgcatag
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