Gadus morhua (Atlantic cod): 115555124
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Entry
115555124 CDS
T10832
Symbol
atg4b
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04136
Autophagy - other
gmh04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115555124 (atg4b)
04136 Autophagy - other
115555124 (atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
gmh01002
]
115555124 (atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115555124 (atg4b)
03029 Mitochondrial biogenesis [BR:
gmh03029
]
115555124 (atg4b)
Peptidases and inhibitors [BR:
gmh01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
115555124 (atg4b)
Membrane trafficking [BR:
gmh04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
115555124 (atg4b)
Mitochondrial biogenesis [BR:
gmh03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
115555124 (atg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
115555124
NCBI-ProteinID:
XP_030227673
Ensembl:
ENSGMOG00000009874
LinkDB
All DBs
Position
12:complement(12584053..12595529)
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AA seq
399 aa
AA seq
DB search
MDAATLTYDTLRFGEFEDFPETSDPVWILGKEFNALTERDDILSDVTSRLWFTYRKNFQP
IGGTGPTSDTGWGCMLRCGQMILGQALVCRHLGRDWRWDKGQRQRDAYVSLLNAFIDKKD
SCYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAMFDRWSRQVVHVAMDNTVVIEDIK
RLCMPWLDYGGACADPGGASALNGCMEGAGAMVEEEGPLWRPLVLLIPLRLGLTDINEAY
IETLKQCFMLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPSVEPSDDGQVHDDTY
HCQHPPCRMHICELDPSIAAGFFCKTEDEFDDWCMRIRRLSCNRGSLPMFELVESQPSHM
VSVDVLNLTPDPLYADFPDSDRLERFFDSEDEEFEILSL
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagctacgttgacgtacgacacacttcgatttggagaattcgaagactttcca
gagacctcagatcccgtgtggatcttagggaaggaattcaacgcactcacagagagggat
gacatcctctcagacgttacgtcgcgactgtggttcacgtacagaaaaaacttccaacca
atcgggggtaccggtccgacgtcggacaccggctggggatgcatgctccggtgtgggcag
atgatcctgggccaggccctggtctgcagacacctggggagagactggcggtgggataaa
ggccagcggcagcgggacgcctacgtcagcctcctcaacgccttcatcgacaagaaggac
agctgctactccatccatcagatcgcccagatgggggtaggcgaggggaagtcgatagga
cagtggtacggaccaaacacagtagcccaggtgctcaagaaactggccatgttcgacagg
tggagtcggcaggtggtccacgttgccatggacaacacggtggtcatcgaagacattaag
cggctgtgcatgccctggctggactacgggggcgcgtgtgcagacccagggggcgccagc
gcgctgaacggttgcatggagggcgcgggagccatggtggaggaagagggccccctgtgg
cggcccctggtactgctcatccccctcaggctgggcctgacggacatcaacgaggcctac
atcgagacgctgaagcaatgcttcatgctgcctcagtctctgggtgtgatcggagggaaa
ccaaacagcgcccactacttcatcggttacgtaggcgaggagctgatctaccttgacccc
cacaccacccagccgtccgtggagcccagcgacgacggccaggtgcacgacgacacctac
cactgccagcacccgccctgccgcatgcacatctgtgagctggacccctccatcgctgcg
ggcttcttctgcaagacggaggacgagtttgacgactggtgcatgcgcatccgacggttg
tcgtgcaaccgggggagtctccccatgttcgagctggtggagtcccagccctcccacatg
gtcagcgtggacgtgctgaacctcacccctgatcccctctacgcagacttcccggactcg
gaccgactggagcgcttcttcgactcggaggacgaggagttcgagatcctgtccctgtga
DBGET
integrated database retrieval system
