Gadus morhua (Atlantic cod): 115555401
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Entry
115555401 CDS
T10832
Symbol
lsm2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03018
RNA degradation
gmh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115555401 (lsm2)
09123 Folding, sorting and degradation
03018 RNA degradation
115555401 (lsm2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115555401 (lsm2)
03041 Spliceosome [BR:
gmh03041
]
115555401 (lsm2)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115555401 (lsm2)
mRNA degradation factors
5'-3' decay
Lsm complex
115555401 (lsm2)
Spliceosome [BR:
gmh03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
115555401 (lsm2)
Complex C
U2 snRNP components
115555401 (lsm2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
115555401
NCBI-ProteinID:
XP_030228104
Ensembl:
ENSGMOG00000019208
LinkDB
All DBs
Position
12:complement(12162148..12164736)
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctactcgttcttcaagtcgttggtggggaaggatgtggtggtggagctgaag
aatgacctcagcatctgtgggaccctccactccgtcgaccagtacctgaacatcaagctg
acagacatcagcgtcacggacccagagaagtacccccacatgctgtcggtgaagaactgc
ttcatccgtggctcggtggtgcgctacgtccagctgcccgccgacgaggtagacacgcag
ctgctgcaggacgcggcccgcaaggaggccatgcagcagaaacagtga
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