Gadus morhua (Atlantic cod): 115555457
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Entry
115555457 CDS
T10832
Name
(RefSeq) polypyrimidine tract-binding protein 1-like isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115555457
03041 Spliceosome [BR:
gmh03041
]
115555457
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
115555457
Spliceosome [BR:
gmh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
115555457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
115555457
NCBI-ProteinID:
XP_030228178
Ensembl:
ENSGMOG00000017615
UniProt:
A0A8C5BAQ6
LinkDB
All DBs
Position
12:complement(361957..385148)
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AA seq
558 aa
AA seq
DB search
MDGGLPLDITAGTKRGSEELFSCVPPAPPIMSSPANGSDSKKFKVEVHGGVAAGAGSLSR
VLHVRKLPGDVTEPEVISLGLPFGSVTNLLMLKAKNQAFIEMSSEEAAQTMVSYYSSVTP
VLRHHPVYVQFSNHKELKTDNSPNQVRAQAALQAVLASQGGVHGPQGGVHPSLGGVHPMA
GLEVPGMGPSPVLRVVVENPFYPVTLDVLHQIFSKFGTLLRVITFTKNNQLQALLQYPDG
MTAQHAKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPSGDPQPGMEH
HAMAFTPGLISASPYGGPAHAFSPAFTIQQTGLTVPGLHGGLASLGLPTATGRLAFSTLP
AGHSVLLISNLNPERVAPHCLFILFGVYGDVVRVKILFNKKENALVQMADGTQAQLAMSH
LNGQRLYGKAVRITLSKHSSVQLPREGHEDQGLTKDYGSSPLHRFKKPGSKNYSNIFPPS
STLHLSNIPPSVVEEDLKMLFSSSGALVKAFKFFQKDHKMALIQMGSVDEAIEALIEFHN
HDLGENHHLRVSFSKSSI
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggacggcggccttcccctcgatatcacagctggtaccaagagaggatctgaagagctt
ttctcctgcgttcctccagctcctcctatcatgagctccccagccaatggcagtgacagt
aagaagttcaaagtggaggtgcatggcggcgtggcggcgggggcgggctctctgagccgc
gtgctgcacgtgaggaagctgccgggagacgtgacggagccggaggtcatctccctgggg
ctgccctttgggagcgtcaccaacctgctgatgctgaaggccaagaaccaggccttcatc
gagatgagctcggaggaggctgctcagaccatggtctcctactactcctccgtgacgcct
gtcctccgacaccacccggtctacgtccagttctccaaccacaaggagctcaagaccgac
aactcccccaaccaagtgagagcccaggcggcgctgcaggccgtcctggcttcccagggg
ggggtccacggcccccaggggggggtccacccctccctggggggggtccaccccatggcc
ggcctggaggtcccggggatggggcccagtccggtgctgagggtggtggtggagaacccc
ttctaccccgtcaccttggacgtcctgcaccagatcttcagtaagttcgggactctgctc
cgggtcatcaccttcaccaagaacaaccagctccaggctctgctgcagtaccccgacggc
atgacggcccagcacgccaagctgtctctggacgggcagaacatctacaacgcctgctgc
acgttgaggatcagcttctctaaactcaccagcctcaacgtcaagtacaacaacgacaag
agccgggactacacccgaccggacctcccctccggggacccccagcccggcatggagcac
catgccatggccttcactcctggtctcatctcagcctccccctacggaggccccgcccac
gccttctccccggccttcaccatccagcagacaggtctgacggttccaggtctccatgga
ggtctagcgtcgttggggttgccgacggcgaccgggcgtctggcgttctccaccctccca
gcgggccactccgtcctgctcatcagcaacctcaaccccgagagagtcgcgccacactgc
ctctttattctcttcggggtgtatggggacgtggtgagggtgaagatcctgttcaacaag
aaggagaacgctctggtgcagatggctgatgggacccaggcccagctcgccatgagccac
ctgaacgggcagcgtctgtacgggaaggcggtgcgcatcacgctctccaagcacagcagc
gtgcagctgccacgcgaaggccacgaggaccagggtctgaccaaggactacggcagctcc
ccgctgcaccgcttcaagaagcccggctccaagaactactccaacatcttccccccctcc
tccaccctgcacctgtccaacatccccccctcggtggtggaggaggacctgaagatgctg
ttctccagctcgggggccctggtgaaggccttcaagttcttccagaaggaccacaagatg
gcgctaatccagatgggctcggtggacgaggccatcgaggcgctgatcgagttccacaac
cacgacctgggggagaaccaccacctccgggtgtccttctccaagtcctccatctga
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