Gadus morhua (Atlantic cod): 115555724
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Entry
115555724 CDS
T10832
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha isoform X1
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04010
MAPK signaling pathway
gmh04020
Calcium signaling pathway
gmh04144
Endocytosis
gmh04510
Focal adhesion
gmh04540
Gap junction
gmh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115555724 (pdgfra)
04020 Calcium signaling pathway
115555724 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115555724 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
115555724 (pdgfra)
04540 Gap junction
115555724 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
115555724 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
gmh01001
]
115555724 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
gmh04090
]
115555724 (pdgfra)
Enzymes [BR:
gmh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
115555724 (pdgfra)
Protein kinases [BR:
gmh01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
115555724 (pdgfra)
CD molecules [BR:
gmh04090
]
Proteins
115555724 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
VEGFR-1-like_Ig-like
VEGFR1-3_N_Ig-like
C2-set_2
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
115555724
NCBI-ProteinID:
XP_030228588
LinkDB
All DBs
Position
12:complement(4521671..4548001)
Genome browser
AA seq
1481 aa
AA seq
DB search
MAGMKRFLTFGVVLLGVISASCGRSTPTIDSKEVEFVLSPLSTFNISCIGENVIWAEPLP
RNTFVFAGSDSSTLVISNASVEHTGTYTCQNQDPDDRPVDEDEELNEAVIYVFVADPEVP
FVPEEAANLMVFPIIGNGVFIPCRVSNPYSHVTLNGVPGGQEIPALYDNKMGFFSNMPVG
QYRCETTAADGRTVHSETYTVENLKEKEESEDFHVEVIASEEAVRAGQPFNITCLAPEGP
LYVQNWLHPTRQAADAVQSKHTAPDSVAYTLSVGGASMQDSGVYECSVTHVISGQTRGNS
VAITVFEETSFVALDHSGIGTLEEVTLLEQTEFTILLDAYPAPKVSWQRDGAAMPENYYL
STKTSHISGNRYESVVTLRHPLEKDSGNYSITALSGDHSAHFSFMLRVKAPSSSVGFRQD
SAPMLDPDREDMIIPLHTSFSLTCRGHSPLYWSMPFDLPEQTQADSSGLFVSAVTVEAAI
VHHTGRYSCHYVNGQEDDEPASIYIYVPDPEVPFLPLSLLSFGNHMVSEPKDMAIQCMVS
NPEANVTLFDVYTQQPVASTYDSQRGAMGVFPAGTYACRALINGQEHISQEYIVHGFPPG
TGTSDLHVELKAQRTALLVGETLNISCIAHGPNLLEDHWKYPGKLAERGIKFVVENTLKR
EIYYTLTIRQASIKDSGLYACSITDIINNLSHTKEQIITVYAAPFVTVAPEFGSVESAEL
DEVKEFRAVVDSFPSVRVTWLKDGQPLDYVVAEISTNLRQLRETRYESVLTLIRAKEEDS
GNYTIRVENGNQSHSHSFTLQVKVPAVIVELMDIHHGSATGQSVVCIAGGRPTPEVEWFV
CKNIKHCANESSQWEPLQTNSTTVSVESHLDQDNNLESQVMFGHLEGNLAVRCLARNHLA
TVSREVKLVASGPASELSVAAAVLVLLVIVIISLIVLVIIWKQKPRYEIRWRVIESVSPD
GHEYIYVDPMQLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKM
LKPTARSSEKQALMSELKIMTHLGPHINIVNLLGACTKSGPIYIITEYCLYGDLVNYLHK
NRENFISLQPEKSRKNLDIFGINPVDESSRSYVILSFEGKGGDYMDMKQADNTQYVPMLE
MNSSKYSDIMRSNYDHPPSQKEFDGEMDNLLSEDGKDGLSTTDLLSFTYQVAKGMEFLAS
KNCVHRDLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNL
YTTLSDVWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHAPSDMYEVMMR
CWNSEPEKRPSFMELTEAVASLLPSSYKRCYDRVNQDFLKSDHPAVTRVCVDTDLPVDDN
AYIGIAYKNHGKLKERESGFDEQRLSSDSGYIIPLPDLEPLSDDEYGKRNRHSSQTSDES
AIETGSSISTLAKREGETLEDITMLDDMCLDSSDLVEDSFL
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atggccggaatgaagagattccttacatttggagttgtcttgctgggcgtcatatcagct
tcctgcggacgctccacgccgaccatcgattccaaggaagtcgagttcgttctctcgcct
ctctccacgttcaacatcagctgcataggcgagaacgtgatctgggccgagcctctgccc
cgaaacaccttcgtcttcgcgggctccgactcgtcaacgctcgtcatctctaacgcgtcc
gtggagcatacgggaacctacacctgtcagaaccaagatcccgacgaccgacctgttgac
gaggacgaagaactcaacgaggccgttatttacgtttttgtcgcagacccagaggtcccg
ttcgtcccggaggaagcggcgaacctcatggtgttcccgatcatcggcaacggcgtcttc
atcccctgccgcgtctcgaacccctactctcacgtgacgctgaatggagtcccgggtggc
caggagattcccgctctgtacgacaacaaaatgggcttcttcagcaacatgccggtgggc
cagtaccggtgtgagaccaccgcggcggacggccgtacggtccacagcgagacgtacacc
gtggagaacctcaaagaaaaagaagagagtgaggacttccacgtggaggtgattgccagt
gaagaggcggtcagggccggccagcccttcaacatcacctgtttggcccctgagggcccc
ctctatgtgcagaactggctccaccccacgagacaggctgcggacgccgtccagtcgaag
cacaccgcccccgactctgttgcgtacaccctgagcgtggggggtgccagcatgcaggac
agcggcgtgtacgagtgttcagtgacgcacgtcatcagcggccagacccggggcaatagc
gtggccatcaccgtattcgaggagacctcgttcgtagccctggaccacagtgggatcggc
accctggaggaggtcaccctgctggagcagacagagttcaccatcctcctggacgcctac
ccggcccccaaggtgtcatggcaacgcgacggagccgccatgccagagaactactacctg
tccaccaaaaccagccacatttcaggaaaccggtacgaaagtgttgtgacgcttcggcac
ccccttgagaaggacagcggtaactacagcatcacagcactcagtggagaccattcggcc
cacttctccttcatgctcagggtcaaagcccccagtagttcggtgggcttccggcaggac
tcggccccgatgctggaccccgaccgggaggacatgatcatacccctccatacctccttc
agcctgacctgccgcggccactccccgctctactggagcatgccctttgacctccccgag
cagacgcaggcggacagcagcggcctcttcgtctccgccgtcaccgtggaagctgccatc
gtccaccacacgggccgctacagctgtcactatgtcaacggccaagaggacgacgagcca
gccagcatctacatctacgtaccagacccagaggtgcccttcctgcccctgtccctgctg
tccttcgggaaccacatggtgtcggagccaaaggacatggccatccagtgcatggtgtcg
aacccggaggccaacgtgacgctgttcgacgtgtacacccagcagccggtggccagcacg
tacgacagccagcgcggcgccatgggcgtgttccccgccggcacgtacgcctgcagggcg
ctcatcaacgggcaggagcacatcagccaagagtacatcgtccacggattcccccccggg
acaggcacctctgacctccacgtggagctcaaggcccagaggaccgccctcctggtgggg
gagacgctcaacatcagctgcatagcccacggaccgaacctcctggaggaccactggaaa
taccccgggaagctggcggagcgcggcataaagtttgtggtggagaacacgctgaagcgg
gagatctactacaccctgaccatccggcaggcctccatcaaggacagcggcctgtacgcc
tgctccatcaccgacatcatcaacaacctgagccatacgaaggagcagatcatcaccgtc
tacgctgcaccgtttgtcactgtggctccggagtttggttctgtggagtcggcggagctg
gacgaggtgaaggagttccgggcggtggtggactccttccccagcgtccgcgtcacgtgg
ctgaaagacggccagccgctggattacgtggtggcagagatcagcaccaacctccgtcag
ctcagagagaccagatacgagagtgtcctgaccctgatccgggccaaggaggaggacagt
gggaactacaccatcagggtggagaatggaaaccagagccatagccacagcttcaccctt
caggtcaaagtgcctgcagtcattgtggagctcatggacattcaccacggctcggccact
ggccagtctgtggtctgcattgctggggggcggcccacccctgaggtggaatggttcgtc
tgcaagaatatcaaacactgtgccaatgagtcgtcccagtgggagccgctccagaccaac
tccaccacggtgtcggtggagtcccacctggaccaagacaacaacctggagagccaggtg
atgtttggtcacctggagggcaacctggccgtgcgctgcctcgcacgcaaccacctggcc
accgtcagcagggaggtcaagctggtggctagcggtccagcatcagagctatcggtagct
gcagctgtgctggtgctgctggtcattgtcatcatctcactcatcgtcctggtcattatc
tggaaacagaaaccgcgctatgagatccgctggcgggtgattgagtcggtcagcccagac
ggtcatgagtacatctacgtggaccccatgcagctgccctacgactccagatgggagttc
cctcgagacagactcgtactcggtcgcatcctgggttcgggggctttcgggaaggtggtg
gagggcacggcctacggactgagccgctcccagcccgtcatgaaggtggccgtgaagatg
ctcaaacccacggcacgctccagcgagaagcaggccctgatgtccgagctgaagatcatg
acccacctgggacctcacatcaacatcgtcaacctgctcggagcctgcaccaagtcaggt
cccatctacataatcacagagtactgtctctatggcgacctggtcaactacctccacaag
aaccgcgagaacttcatcagcctgcagccagaaaagagccggaaaaacctggacatcttt
ggcatcaacccggtggacgagagtagccgcagctacgtcatcctgtcctttgagggcaag
ggaggagactacatggacatgaagcaggcggacaacacccagtacgtgcccatgctggag
atgaacagctccaagtactcggacatcatgcgctccaactacgatcaccccccctcgcag
aaggaattcgacggtgagatggacaacctgctgtcagaagatggcaaggacggcctgagc
accaccgacctgctcagcttcacctaccaggtggccaagggcatggagttcctcgcctcc
aagaactgtgtgcaccgcgatctggcggcccggaacgtgctgctgtcccaggggaaaatc
gtgaagatctgcgacttcggcctggcccgtgacatcatgcacgacaacaactatgtctcc
aaaggcagcaccttcctgccggtgaagtggatggcaccagagagcatctttgataacctg
tacactaccctgagtgacgtgtggtcctacgggatcctgttgtgggagatcttctccctt
ggtgggactccgtacccgggcatggtggtagactccagcttctacaacaagatcaagagt
ggctacaggatggccaagccagagcacgcaccgagcgacatgtatgaggtgatgatgcgg
tgttggaacagtgagcctgagaagcgtccttctttcatggaactgaccgaggctgtggcc
tccctccttccctccagctacaagagatgctacgaccgggtgaaccaggacttcctgaag
agcgaccacccggcggtgacccgcgtgtgcgtggacacggacttgcccgtcgacgacaac
gcctacatcggcatcgcctacaagaaccacggcaagctgaaggagcgcgagagcggcttc
gacgagcagcgcctcagctccgacagcggctacatcatccccctgcccgacctggaaccg
ctgtcggacgacgagtacggcaagaggaaccgccacagctcccagacctctgatgagagc
gccatcgagacgggctccagcatctcaacgttggccaagcgagagggagagaccctggag
gacatcaccatgctggacgacatgtgtctggactccagcgacctggtggaggacagcttc
ctgtga
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integrated database retrieval system
