KEGG   Gadus morhua (Atlantic cod): 115555747
Entry
115555747         CDS       T10832                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
gmh  Gadus morhua (Atlantic cod)
Pathway
gmh03030  DNA replication
gmh03410  Base excision repair
gmh03420  Nucleotide excision repair
gmh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    115555747 (rfc4)
   03410 Base excision repair
    115555747 (rfc4)
   03420 Nucleotide excision repair
    115555747 (rfc4)
   03430 Mismatch repair
    115555747 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gmh03032]
    115555747 (rfc4)
   03036 Chromosome and associated proteins [BR:gmh03036]
    115555747 (rfc4)
   03400 DNA repair and recombination proteins [BR:gmh03400]
    115555747 (rfc4)
DNA replication proteins [BR:gmh03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    115555747 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    115555747 (rfc4)
Chromosome and associated proteins [BR:gmh03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    115555747 (rfc4)
DNA repair and recombination proteins [BR:gmh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     115555747 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    115555747 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA_lid_RFC1 AAA_assoc_2 AAA_22 AAA_11 AAA_16 Gp44_lid DUF815 Mg_chelatase AAA_30 SLFN-g3_helicase AAA_24 RuvB_N AAA_19 AAA_5 ResIII Cdc6_lid AAA_7 AAA_28
Other DBs
NCBI-GeneID: 115555747
NCBI-ProteinID: XP_030228622
Ensembl: ENSGMOG00000008598
UniProt: A0A8C4ZC55
LinkDB
Position
12:complement(21666284..21672059)
AA seq 357 aa
MQAFLKGTSVQSSKLQKDKGAPGTSTEKRVRPVPWVEKYRPKCVDEVAFQDEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAASRELFGPQLYKQRVLELNASDERGIQVVRHKVKN
FAQLTVAGTRTDGKRCPPFKIIILDEADSMTGPAQAALRRTMEKESRTTRFCLICNYVSR
IIEPLTSRCSKFRFKPLANWIQEERLLEICSKENLKYSKEGIAALVKVSEGDLRKAITFL
QSAARLVVDQEITEKTIVEIAGVVPSKMIDNLLQTCFKGTFEKVQIAIKDMVDEGYAATQ
ILIQLHESIIEQDLNDKKKSAITEKMAVVDKCLADGADEYLQLLSLCSIIIEQSSTN
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgcaggcctttttgaaaggtacgtctgtccaatctagcaaactccagaaggacaaggga
gccccgggtaccagcacagagaagagagtccgacctgtcccttgggtcgagaaatacagg
ccaaagtgtgtggatgaagttgcttttcaagacgaggtggtagcagtattgaagaaatct
ttggaaggggcagatctacccaacttgctattctatggtcctcctggaacaggaaagacc
tcgaccatcctcgcagcatccagggaactctttggtccccagctgtacaaacagagggtg
ttggagctgaatgcctcagatgagcgtggcatccaggtggtccgccacaaggtcaagaac
tttgcacagctcaccgtggctggaacacgcacagatggaaagaggtgccctccctttaaa
atcatcatcctggacgaggctgactccatgaccgggccagcccaggcagccctgaggaga
accatggagaaggagtctcgcacaacacgtttttgtctcatctgcaattatgtcagcagg
atcatcgagccgctgacctccaggtgttccaagttccgcttcaagccccttgccaattgg
atccaagaggagcggttgctggaaatctgttcaaaggagaacctgaagtactccaaagag
ggtatagcagcgttggtgaaggtgtcggagggggacttgcgtaaggccatcacattcctc
cagagcgcagcacgcctcgtcgtagaccaggaaatcacagagaagaccattgtggagatc
gccggagtagtcccttccaaaatgattgacaacttacttcaaacctgcttcaaagggact
tttgagaaagttcaaattgccattaaggacatggtggatgaaggctatgcagccacacag
atcctgatccagctccacgagagcatcattgaacaggacctaaatgacaagaaaaagtca
gccatcacagagaagatggcggtagtggataagtgcttggcggatggagccgacgagtat
ctccagctgttgagcctgtgttcgatcattattgaacagtcctctaccaactga

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