Gadus morhua (Atlantic cod): 115555833
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Entry
115555833 CDS
T10832
Symbol
fip1l1
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115555833 (fip1l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmh03019
]
115555833 (fip1l1)
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
115555833 (fip1l1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
PRIMA1
Motif
Other DBs
NCBI-GeneID:
115555833
NCBI-ProteinID:
XP_030228736
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Position
12:complement(4678977..4692510)
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AA seq
347 aa
AA seq
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MSELDLDNMWEEEEDGWLYEGIETRDNTGEMEIIYCTATAHETAKDHGGEMETQNAEGDN
PEEDSNQDNEDDDDDDNDVCVTIGTINAGASSLCTIKSHGIRSTSLTVGSGGRPNPIAKA
LDLNALGDVQGIPLLWVDIEEKPWRKPGADISEYFNYGFNEDTWKAYCGKQRRIRGGWEN
FSASSRMKVQRGRTDPANKEFLFDRPSLCSVYQPDLRRWSGAIDVIGGQTATLSRQEGRR
RNRGNAKQVLSEASRDSSANKMISFLRPNIPPPPLPPPLPNVSSGAQLLLLQRCLSPPPP
GFSSMDRMHYKSRRDLESYREREKGRAREPGSTMVATRNTHSKARPL
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaattggatttggacaacatgtgggaggaggaagaggatggatggctgtatgaa
ggaattgaaaccagggataatacaggtgaaatggaaataatatactgcacagccacagca
catgaaactgcaaaggatcatgggggtgagatggaaacgcagaatgcagagggagacaac
ccagaggaagacagcaaccaagataatgaagatgatgatgatgacgataatgatgtttgt
gtcaccataggaaccataaatgcaggagcctcatcgttatgcaccataaaatctcacgga
attcgatccacatctttgactgttggatctgggggaaggcccaatcctatagccaaggct
ctggacctgaacgccctgggcgacgtccagggaatccccttgctgtgggtggacatcgag
gagaaaccgtggaggaaaccgggtgccgacatttcagaatactttaactacggctttaat
gaggacacctggaaggcctactgtgggaaacagaggagaatcagaggaggttgggagaac
ttctctgcttcttccagaatgaaggtccagagggggcgtacagacccagcaaacaaagaa
ttcctgtttgatcgtccctcattatgctctgtataccaaccagatctgaggaggtggagt
ggcgctatcgatgtgattggaggacaaactgctaccctcagcaggcaggaagggcgcaga
cgtaaccgaggaaacgccaaacaggtgctctctgaggcgtcacgtgattcgtcggccaat
aagatgatttccttcctccggcccaacatccccccgccccctctaccccctcccctaccc
aatgtcagctctggtgctcagcttctcctcctgcaacggtgtctctcgcctcctcctcca
gggttctcttccatggacaggatgcactataaaagcaggagagacttggagagttaccgg
gagagagagaaaggccgggcaagagagcctggatcgaccatggttgcaacgaggaacaca
cacagcaaagccagacctctctga
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