Gadus morhua (Atlantic cod): 115556746
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Entry
115556746 CDS
T10832
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC2-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03082
ATP-dependent chromatin remodeling
Brite
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115556746
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115556746
PBAF complex
115556746
GBAF(ncBAF) complex
115556746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
115556746
NCBI-ProteinID:
XP_030229882
Ensembl:
ENSGMOG00000000818
LinkDB
All DBs
Position
13:5988068..6005066
Genome browser
AA seq
1040 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNPPLTKLPMKCFVDFKSGGSLCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYMSSDIEPKLLGKLKDIIKRHQGSVTEDKSACSHLVVP
IPTSLEEEEWVRPVMKRDKQVLLHWGYFPDSYDTWISASEVEAAVEDPPTPEKPKKVHAR
WILDLDQYNEWMNEEDYEVGEAGPRRKRISAKTLTDEVTTPDERRDKKPAGAKKRKRSPS
PSPTPPPPESKKKNTKKGPTTPYTKSKRGQREEEQEDLTKDLDEASPAPATEEGTPAKTN
SAKKDSDSTPVKGGTENDEQEDESMETTGKEEAEGSPSVKGEPVKASDLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKASQPPAAQQMLSFPDKVKEKPADLQNFGLRTDMYSKKSSAVKSKTSASSMRDWTEQ
ETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEESSSTLGPLAYQPV
PFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAAR
ASGRQDPLYGLEGSGIAGTGLEEGEKPDESSEESKAESQSSEEKRDAKENKEGAPQEEEK
QGENGRKEEEKGRDGDGERDGEKADSDMGDGDKEKEGKEVTEEGAREAESEGERKAKVEX
DVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELET
IMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQQAAAAAAGGPPGPAAS
GQPAPGTPTPASAPSPAPPTASVPVGESQPPVGPQASPPGPQGPAGPAQSNSNPTPVPHE
PATPLAGDTVPTPAPVPPPQ
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgatacc
gtttcacaatttgataatgtccgcgtgtggttggggaagaattacaaaaagtacatccaa
gcggaacccccgaccaacaagtccctgtccagcctggtggtgcagctgctgcagttccag
gaggaggtcttcgggaaacatgtcagcaacccgccgctcactaagctaccgatgaagtgt
tttgtggactttaaatctggaggatctctctgtcacatcctggctgctgcctacaagttt
aagagtgaccagggatggcgcaggtttgacttccagaacccctcgaggatggaccgaaat
gtggagatgttcatgaccatcgagaagtccctggtgcagaacaactgtctgagcagaccc
gtcatctacatgagctccgacatcgagcccaagctgttggggaagctgaaggacatcatc
aagagacaccagggctcagtgactgaagacaagtctgcctgctcccacctggtggtccct
attcccaccagcctggaggaggaggagtgggtgcgtccggtgatgaagagagacaagcag
gtgctcctccactggggctattttccagacagttacgacacctggatctctgccagcgag
gtggaggcggcagtggaggatcctccgactccagagaagcccaaaaaggtgcacgccagg
tggatcctggacctggaccagtacaacgagtggatgaacgaggaggactacgaggtgggg
gaggcgggaccccggaggaaacgcatctcggccaagaccctgacggacgaggtgaccacg
cccgacgagaggcgggacaagaagccggccggcgccaagaagaggaaacgatcgccgtcg
ccgtcgccgacgcccccgcccccggagagcaagaagaagaacaccaagaaggggcccacc
accccctacaccaagtctaagcgcggtcagcgggaggaggagcaggaggacctcaccaag
gacctggacgaggcctcgcccgcccccgccaccgaggaggggacccccgccaagaccaac
agtgccaagaaggactcggactccaccccggtgaagggaggcacagagaacgacgaacag
gaagacgagtcgatggagacgacgggaaaggaggaggccgaggggtcccccagtgtgaaa
ggggagccggtgaaggcgtcggacctccacgaggacaacgtgacggagcagacccaccac
atcatcatcccaagctacgccgcgtggttcgactacaacagcgtgcacgccatcgaacgc
agagccctgcccgagttcttcaacggcaagaacaaatccaaaacgcccgagatttacctg
gcctaccggaacttcatgatcgacacgtaccggctgaacccccaggagtacctcacctcc
acggcctgccggcgcaacctggccggggacgtctgcgccatcatgagggtgcacgccttc
ctggagcagtgggggctcatcaactaccaggtggactctgagagccggcccacccccatg
ggacccccgcccacctcccacttccacgtcctggcagacaccccgtccagcctggtgccc
ctgcagcccaaagcctcccagcctcccgccgcccagcagatgctgtccttcccagataag
gtgaaggagaagccggctgacctgcagaacttcggcctgcgcacggacatgtacagcaag
aagagcagcgccgtcaagagcaagacctccgccagctccatgagggactggaccgaacag
gagaccctccttctgctagagggtctggagatgtacaaggacgactggaacaaggtgtcg
gagcacgtgggcagccgcacgcaggacgagtgcatcctgcacttcctgcggctgcctatc
gaggacccctacctggaggagagctcgtccaccctgggcccgctggcctaccagcccgtc
cccttcagccaggcggggaaccccgtcatgagcaccgtggccttcctggcctccgtggtg
gacccccgcgtcgcctccgccgccgccaagtccgccctggaggagttctcccgcatgaag
gaggaggtcccggcggcgctggtggaggcccacgtgcggcgggtggaggaggcggcccgg
gccagtggacggcaggaccccctgtacggcctggaggggagcggcatcgccgggaccggc
ctggaggagggggagaagccagatgaaagcagcgaggaaagcaaagctgagagccaatcc
agcgaggagaagagagacgccaaggagaacaaggagggcgcgccccaggaggaggagaag
cagggagagaacgggaggaaggaggaggagaaggggagggacggcgacggagagagggac
ggcgagaaggccgactctgacatgggcgacggagacaaggagaaggaggggaaggaggtg
acggaggagggggcgagggaggccgagagcgagggggagaggaaggccaaggtggagncg
gacgtgggggaggggaacctggccacggccgccgcctccgccctcgccgccgccgccgtc
aaggctaagcacctggcggcggtggaggagcggaagatcaagtccctggtggcgctgctg
gtggagacccagatgaagaagctggagatcaagctgaggcactttgaggagctggagacc
atcatggaccgcgagcgagaggcgctggagtaccagcggcagcagctgctggccgaccgc
cagtccttccacatggagcagctgaagtacgccgagatgagggcccgccagcagcacttc
cagcagatccagcaggccgccgccgccgccgccggcgggccccccggccccgccgccagc
ggccagcccgccccggggacccccacgccggcctccgcccccagccccgccccccccacc
gcctccgtccccgtgggggagagccagccccccgtgggcccccaggcctcccccccggga
ccccagggcccggccggccccgcccagtccaactccaaccccactccagtcccccatgag
ccagcgacccccctggccggggacacggtgccaacccccgctccagtgccccccccgcag
tga
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