Gadus morhua (Atlantic cod): 115556788
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Entry
115556788 CDS
T10832
Name
(RefSeq) LOW QUALITY PROTEIN: host cell factor 1-like
KO
K14966
host cell factor 1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03083
Polycomb repressive complex
gmh04980
Cobalamin transport and metabolism
gmh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
115556788
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
115556788
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115556788
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gmh01009
]
115556788
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gmh03036
]
115556788
03029 Mitochondrial biogenesis [BR:
gmh03029
]
115556788
Protein phosphatases and associated proteins [BR:
gmh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115556788
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
115556788
HMT complexes
COMPASS/SET1 complex
115556788
MLL-HCF complex
115556788
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
115556788
Mitochondrial biogenesis [BR:
gmh03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
115556788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_KLHDC2_KLHL20_DRC7
Beta-prop_ATRN-LZTR1
Kelch_3
Kelch_5
Kelch_4
Kelch_1
fn3
Motif
Other DBs
NCBI-GeneID:
115556788
NCBI-ProteinID:
XP_030229960
LinkDB
All DBs
Position
13:17569552..17589424
Genome browser
AA seq
1767 aa
AA seq
DB search
MSNPGTTGSVLQPRWKRVLGWSGPVPRPRHVTQSWAIKELMVVFGGGNEGIVDELHVYNT
ATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKKLK
AKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELRAGSSV
VGWDIPITYGVLPPPRESHTAVVYTDKTSRKSRLIIYGGMSGCRLGDLWTLDIETLTWNK
PSVNGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDSM
CWETVLMDTLEDNIPRARAGHCSVAINSRLYVWSGRDGYRKAWNNQVCLQRPLYYVFTDR
PHAPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPAATAATSPALTATPSLPGHA
PKSPAPAATALSAQSHPQTAILKVAAPQSATGTSIVTVRPNQMGKSPVTVTSLPPGVRMV
VPAQNTQGSPIGSSPQMSGMAALAAAAAATQKIPPSSGTVLSVPAGATILKTMAVSPGTT
TVKMSSPLMVSNPATRMLKTAAAQVGSATGSSPNTPTRPIITVHKSGTVTVAQQAQVVTT
VVGGVTKTITLVKSPLTMGSGGTLQISNLGKMMSVVQTKPGQTSIGGQSSTNPLTQLIQT
KGGLPAGTILKLVTSADGKPTTIITTSQAGGGGNKPHILNISGMSPSNKQGTTIIKTIPV
SAIMTQSGATGVTSSSGMKTPITILTTKMMTSGTPGKIITAVPKLGGASGQQGLTQVVLK
GAPGQPGTYLRTVPMGSMGGVRLVTPVSVSAVKPNVTTLVVKGTTGVTTLGTVTGTVSTS
LAGGSVATANASLGTPITTLGTIATLSSQVINPTSITVSAAQTNLTSVSSLPSSAIPVQN
QPTQVTLITTPSGVEAQPVQDLPVSILASPTSEQPSSTEAASAGEGSGTVTLVCSNPPCE
THETGTTNTATTSSATMGAGQVCSNPPCETHETGTTNTATTASSSMGTLRMCSNPPSETQ
KTAVTNTATTTTSSSVGGAPKVCSNPPCETHETGTTNTSTQAASSMGNTQKSTDSGTAQR
VCSNPPCETHETGTTNTSTQAASSMGGGQTSTDSGTAQRVCSNPPCETHETGTTNTSTQA
ASNMGAGQTSTDSGTAQRVCSNPPCETHETGTTNTPSTATSTMGGDQTSTGSDTVQRVCS
NPPCETHETGTTNTATTASCNMETGEGAAQQTEEGADGTGGSEAASTTAAAGSSPPSASQ
GRAVTTVTQATPAPGPSVPSISSITEGASSASGATEEPMQTDEAPAAEAAPAEEAPTAME
AQAQGEATAAASAPSTTTLNLPAELMSEGQGATLMVTGLSDEELAVTAAAEAAAQAAATE
EAQALAIQAVLQAAQQAVMNESDSSGDRQQQAGIPIVLTQQDLVALVQQQQQLQEAQAAA
QQASVDASLPTEGLAPADSLNDPSVESNGHNEMAASVTTAVASLLPRTTAEALAPSSTFA
PVVAMASPAKLQAAAALTEVANGIEGGKQNPQPAPVKTVLKKENQWFDVGIVKVTNMVVT
HFFMPSDDSQGDDDSGVMPDYGQMKKMELQPGTAYKFRVAGINACGRGSFSEISAFKTCL
PGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSNQTAEAKTSTPAQLAF
MRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQESGKDAA
SAKPAPKRPGTSPDTKATGPKKARTDQ
NT seq
5304 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatcctgggaccacagggtcggttctccagccgcggtggaagcgggttctagga
tggtctgggccggtgcctcggcccaggcatgtgacacagagctgggctataaaggagctt
atggtcgtctttggaggtggaaatgaaggaattgtcgacgaattgcatgtctacaacact
gctacaaaccagtggtttatcccagctgtccgtggtgatattcctcctggctgtgctgcc
tatgggtttgtttgtgatggcacaaggttgctggtatttggtggtatggtcgagtatgga
aaatacagcaacgacctctatgaactacaggccagccgatgggaatggaagaagttgaaa
gcaaagaaccctaaaaatgggccacctccatgtccacgtctgggtcacagtttctccctg
gttggcaacaaatgctacctgtttggtggactggccaatgacagcgaggatcctaagaac
aacattcctagatacctgaacgatctgtacaccctggagctccgtgcaggctccagcgtg
gtgggatgggacatcccgatcacctacggagtgcttccaccaccacgtgagagccacacg
gctgtggtctacacagacaagaccagcaggaagtctcgtctcatcatctacggcggcatg
agtggctgtcgtttaggagacttgtggacactggatattgaaaccctgacctggaacaag
ccgtcagtaaatggcacagctccacttcccaggagtcttcactcagccaccaccatcacc
aacaagatgtatgtgtttggcggctgggttcctctggtgatggatgacgtcaaggtggcc
acacatgagaaggaatggaagtgcaccaacacactcgcctgcctgaacctagactctatg
tgttgggaaacggtgttgatggatacgctggaggacaacatcccacgagcgcgcgctggt
cactgctctgtagccatcaactccagactatatgtatggagtggacgcgatggctaccgc
aaggcgtggaacaaccaggtctgcctgcaaagacctctgtattatgttttcacagatcgg
ccgcacgcaccagccagggttcagttagttcgtgccaacaccaactcgctcgaggtgagc
tggggcgctgtctccacggcggacacctacctgctccagctgcagaagtacgacatccca
gcagccaccgctgccacgtctcctgccctgactgccaccccctcactgcccggccacgcc
cccaagagccctgccccggccgccaccgccctgtccgctcagagtcacccacagacagct
atattgaaggttgcggctccccagtctgcaacgggtacgtccatcgtcaccgtccgtccc
aaccagatggggaagtcccccgtcactgtgacatcacttcctcccggggttcgcatggta
gtgccggcccagaacacgcagggatcgccaatcggcagcagccctcagatgagtggcatg
gcagctctggctgcagcagcggcagctacacagaagattccgccctcctccggcactgtc
ctcagtgtacccgctggggcaaccatcctcaaaacaatggcggtctcccccggcaccacc
accgtcaaaatgtcctctccactcatggtgagtaacccggccacccgtatgctgaagact
gcagctgcccaggtggggtccgccactgggtcctctcccaacacgcccaccaggcccatc
atcaccgtgcacaagtcaggcacagtaacagtagcccagcaggcccaggtggtcaccact
gtggtgggaggagtcaccaagaccatcaccctggtcaaaagccccctcaccatgggcagc
ggaggcacgctgcagatctccaaccttggcaagatgatgtcggtagtacaaaccaagcca
gggcagacgtctattgggggccagtcttcgacaaaccccctcacgcagctcatacagaca
aagggtggtcttccagctggaaccatcctgaagctggtgacctctgcggatggcaagcca
accaccatcatcaccacctcccaagcagggggtggcggcaacaagccacacattttgaac
attagtggcatgtcccccagcaacaagcagggcaccaccatcatcaagaccatccctgtc
tcggccatcatgacccagtctggagccacaggtgtcacaagcagttcaggcatgaagacc
cctattacgatcctaaccacaaagatgatgacctctggcacccctggcaaaatcatcacc
gctgtgcctaaacttggcggtgcctctggccaacaaggactcacacaggtggttttgaag
ggagctcctggacagccagggacctacctacgcaccgtgcccatgggcagcatgggggga
gttcgactcgtcacacccgtctctgtatccgctgtcaagcctaatgttaccaccttggtt
gtcaagggaaccaccggagtcaccactctggggacagtcactggcacagtatccaccagc
ctggcagggggcagtgttgctactgccaatgcctctttgggcaccccaatcaccaccctg
ggcaccatcgcaaccctgtccagtcaggtgattaatcccacctccatcactgtgtctgca
gcccagaccaacctgacctctgtgtcctcgcttccctcctctgcaatccctgtgcagaac
cagcctacccaggtgaccctcattaccacacccagcggtgtagaggcccagccagtgcag
gacctcccagtctcgatcctggcttcgcccacctcagaacagcccagttccactgaggcc
gccagcgccggggagggctccggtaccgttaccctggtgtgctccaaccccccgtgtgag
acccatgagacgggcaccaccaacacggccaccacttcctccgccaccatgggtgcgggt
caggtgtgctcaaaccccccgtgtgagacccatgagacgggcacaaccaacacggccacc
accgcctcctccagcatggggacgctgcgcatgtgctccaacccgccaagcgagacccaa
aagacggcggttaccaacacggccaccaccaccacctcttcttccgtgggcggggctccg
aaggtgtgctccaacccaccgtgcgagacccacgagacgggcaccaccaacacatccacc
caggccgcatccagcatgggcaacacacagaaaagcaccgactctggtacggcacagagg
gtctgctccaacccgccttgcgagacccacgagacgggcaccaccaacacctccacccag
gccgcatccagcatggggggtggccagaccagcacagactccggaacggcgcagagagtc
tgctccaacccgccctgtgaaacccacgagacggggaccaccaacacctccacccaggcc
gcttccaacatgggggctggccagaccagcacagactctgggacggcgcagagagtctgc
tccaacccgccctgtgaaacccacgagacggggaccaccaacaccccgtccacggcgacc
tccaccatggggggcgaccagacgagcacaggctccgacacagtccagagggtctgttcc
aaccccccctgtgagactcacgagacggggaccaccaacactgctaccactgccagctgc
aacatggagaccggcgagggcgcagcccagcagacagaggagggtgcagatgggaccggc
ggttcagaggccgcctccaccaccgcagcagccgggtccagcccgcccagcgcctcccaa
ggccgggcggtcaccaccgtcacccaggccacgccagcccctgggccctctgtaccttcc
atctcatcgatcacagagggggccagttcagccagcggggccacggaggagcccatgcag
acggacgaggccccggctgcagaggcggccccagccgaggaggcccccacagccatggag
gcccaggcacagggagaggcgacagcagcagcctcagccccctccaccaccacactgaac
ctccccgccgagctcatgtccgagggccagggggccacgctcatggtgaccggcctctct
gacgaggagctggccgtcaccgccgccgcagaggccgccgcccaggccgccgccacagag
gaggcccaggccctggccatccaggctgtgctgcaggccgcccagcaggccgtcatgaac
gagagcgactcgagcggcgaccgacagcagcaggccggcattcccatcgtgttgacccag
caggatctggtggcactggtccagcagcagcagcagctgcaggaggcccaggccgccgcc
cagcaggccagcgtggacgccagcctgcccaccgagggcctggcccccgcagacagcctc
aacgacccctcggtggagagcaacggccacaacgagatggccgccagcgtcaccaccgcc
gtggcgtccctgctaccgcgcaccaccgccgaggcgctggccccgtcgagcacgttcgcg
cccgtcgtggccatggccagcccggccaagctgcaggccgcagccgctctgaccgaggtg
gccaatggcatcgaaggagggaagcagaatccccagccagcaccagtgaagaccgtgtta
aagaaggagaaccagtggtttgacgtgggcatcgtcaaggtcaccaacatggtggtcaca
cactttttcatgccatccgacgactcgcaaggggatgatgactcgggtgtaatgccagac
tacggccagatgaagaagatggagctgcagccaggcaccgcctacaagttccgggtggcc
gggatcaacgcgtgtggtcgtggatccttctccgagatctctgcgttcaagacctgtcta
ccagggttccctggggctccttgcgccatcaaaatcagcaagagcccagacggcgcccac
ctgacctgggagcccccgtcggtgacgtccgggaagatcatcgagtactctgtgtacctg
gccatccagagcaaccagaccgcagaggccaagacctccaccccggcccagctggccttc
atgcgtgtgtactgcggccccagcccctcctgcctggtgcagtcgtccagcctctcgaac
gcacacatcgactacaccaccaagccagccatcatcttccgcatcgccgcccggaacgag
aagggctacggccccgccactcaagtccgatggctccaagaatccggcaaagacgcagcc
tcggcgaaacccgcccccaaaagaccaggcacctcgcccgatactaaggctactggtcca
aagaaagcgagaacggatcagtga
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