Gadus morhua (Atlantic cod): 115556898
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Entry
115556898 CDS
T10832
Name
(RefSeq) LOW QUALITY PROTEIN: protein polybromo-1-like
KO
K11757
protein polybromo-1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115556898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115556898
03036 Chromosome and associated proteins [BR:
gmh03036
]
115556898
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115556898
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
115556898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
DUF7877
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
115556898
NCBI-ProteinID:
XP_030230164
Ensembl:
ENSGMOG00000016872
LinkDB
All DBs
Position
13:8457948..8472947
Genome browser
AA seq
1580 aa
AA seq
DB search
MSSKRRRATSPSSSVSGGGDLDDASSTPGSGRKRRRTSNIPTVDPISVCNELFNTIRDYK
DDQGRQLCEFFLRVPKRRNQPDYYETVSQPIDMAKIQQKLKLEDYQEVEHLTADFQLLFN
NAKSYYKPDSEEVRAACRLWMVYVQTRTEFVQPGDGDDDDDDDLLDNTGLSTEDETPTAC
RKESLEQLLEAVVSHADPAGRVISELFQKLPSKVHYPDYYAVIKEPIDLRAIAQRIQIGY
YKSINAMAKDIDLLXKNAKTYNEPGSQVFKDANAIKKVFMQRKTELEHAEPTKSSVRIRN
RRSAQGDPSLGCQRVSLQYGSESEDEPVAAGTPVRYDDPDLEGEGPGSGGDGSHPVFQLY
DAVRRCRNNQGQLLSEPFMQLPSRREYPDYFQQIKNPIALQQIREKMKQGEYESVEQMEA
DLNLMLENAKRYNMPTSGIYKRALRLQQILQLKKRDVLRRDDADEDSILSSDAGSTKRKS
HKKNIRKNRMKTLFSAVIDAKEVGTGRRLCELFMVKPFKKDYPDYYKVILEPMDLKTIEH
NIRSERYANEDALLVDMKLMFRNARHYNEEGSQVYNDSDVLEKVLKDKRKEMGAPPEEEE
VGSPKLKLRKSGVSPKKSKYLTPLQQRLTELYDAVRNFTDRRGRRLSTIFLRLPSRAELP
DYYATIKRPIDMERLRSHMLSARYQDVEAMVEEFALMFNNACTYNEPESLIYRDALVLHR
VLLETRRQQEGAEDSGAPPLVPLVRELIRNLFVSVLGHQDEEGRVYSDSLAEIPAVDPEA
PEKPAVNFEVVRANVERGRYHRLDVFQEHMFEVLEKARRLHRTDAEAFEDAVELQQFFVK
IRDELCKNGEILMSPALNYTSKHLHSDIDQEKREKIPLEFEDDKQKREEESKDADKSGEL
PAEAWQSGPERTYSQDCSFENSTYRVGDFVYVTPTEANHKPHIVSIERLWTDQAGEKWLY
GCWFYRPSETFHLATRKFLEKEVFKSDYYNKVPISRVRGKCMVMFVKDYFKLHPEGYRAE
DVYICESRYTARNKTFKKIKVWAMPVTSVRLAQRDTPLPVVRVASMFAKPPQERALMDVS
DADKGGCVDKEREDVPVEMXGAEPGCQYYDQLRYKNMWLKVGDCVYIQSHGLSKPRVARV
EKLWVQNGATFFFGPIFIHPEETAHEPTKMFYKKEVFLSNLEETLPMTCVLGKCLVASFK
DYLSCRPTEVPEDDVLLCESRYIETEKQIKKFKGLKRFSLSAKVVEDETYYFRKLVVPQK
EASPLLNKKIEELELKLADVEDGDEDLEDLDDDDEAPATPSMPLMQTPVTVDLDXTAYTP
SQSTPKIKGMSKKEGSKRKINXSGYILFSSEMRAVIKARHPDFSFGELSRLVGTEWRNLE
ATKKAEYEERAAKVVEQQERERARQQASPRAGTPVGALXGVVPSPSTMGMINQTMPPVSG
MMAPGMNGMAGSPNPGTHYMQQPGMYSPGPQAPPPYPGQPGQPASPLFVAPPPKTQRVLH
SEAYLKYIEGLNSDSGTVSKWDQTLKAQRRDAHLTKEQESHLPSHWLKSKGAHRTMADAL
WRLRELMLRDSLNIRQAYNL
NT seq
4743 nt
NT seq
+upstream
nt +downstream
nt
atgagctccaagaggagacgggcaacctccccatccagcagtgtgagcggcgggggcgat
ttggatgatgcgtcctccacgcctggaagtggtagaaaaagaagaaggacttctaatatc
cctaccgtagacccgatttctgtttgcaacgagctgttcaacaccatcagggactacaag
gatgaccaaggaaggcagctttgtgaattcttccttcgggttccgaagagaaggaatcaa
ccagactattatgagacagtttcccagcctatcgacatggcaaagatccaacagaaactt
aaactggaggactaccaagaagtggagcatctcaccgccgacttccagctcctgtttaat
aatgccaagtcatactacaagccggacagcgaggaagtacgggccgcctgcaggctgtgg
atggtctacgtccagaccaggaccgagtttgtgcagcccggagacggggacgacgacgat
gacgacgacctgctcgacaacacaggactctcgaccgaggacgagaccccgacggcctgt
cggaaagagtctctggagcagctcctagaggctgtggtgtctcacgcagaccccgcaggc
cgagtcatcagtgaactcttccagaaacttccttccaaagtgcattatccagactactat
gcagttataaaggagcccattgatctgcgagcgattgctcagagaatacagattggatac
tataaaagtatcaacgctatggccaaggacattgacctacttngcaaaaatgccaaaacg
tacaatgaacccggatctcaggtctttaaggatgctaacgccatcaaaaaagtcttcatg
cagcggaagacggaactcgaacacgccgagccgacaaagtccagcgttcgcatcagaaac
cgcaggtcggcccaaggcgacccgtcactcgggtgtcagcgcgtgtccctgcagtacggc
tcggagagcgaggacgagcccgtggccgccggcacgcccgtgcgctacgacgacccggac
ctggagggcgagggcccgggctccggcggggacgggagccacccggtcttccagctgtac
gacgcggtgcggcgctgccgcaacaaccagggccagctgctgtcggagcccttcatgcag
ctgccctcccgcagggagtaccccgactacttccagcagatcaagaaccccatcgccctg
cagcagatcagggagaagatgaagcagggcgagtacgagagcgtggagcagatggaggcg
gacctgaatctgatgctggagaacgccaagcgctacaacatgcccacctcgggcatctac
aagcgcgccctcaggctgcagcagatcctccagttgaagaagagggacgtcctcaggagg
gacgacgcggacgaggacagcatcctgtcctccgacgccgggagcaccaagaggaaaagc
cataagaagaacatcaggaagaaccgcatgaagacgctgttcagcgccgtgatcgacgcc
aaggaggtgggcacgggccggcgcctgtgcgagctcttcatggtcaagcccttcaagaag
gactaccccgactactacaaggtgatcctggagcccatggacctgaagaccatcgagcac
aacatccgctcggagcgctacgccaacgaggacgccctgctggtggacatgaagctcatg
ttccgcaacgcccgccactacaacgaggagggctctcaggtttacaacgattcagacgtc
ctggagaaggtcttgaaagacaagcgcaaggagatgggagctccgcccgaagaggaggaa
gtgggttcgccgaagctcaagctgagaaagtcgggcgtctcccccaagaagtccaagtac
ctcaccccgctgcagcagcggctcaccgagctctacgacgccgtgcgcaacttcacggac
cgccgcggccgccgcctcagcaccatcttcctgcggctgccgtcgcgcgccgagctgccc
gactactacgccaccatcaagaggcccatcgacatggagcgcctgcgcagccacatgctg
tcggcccgctaccaggacgtggaggccatggtggaggagtttgcgctcatgttcaacaac
gcgtgcacctacaacgagcccgagtccctgatctaccgcgacgccctggtgctgcaccgc
gtgctgctggagacccggcggcagcaggagggcgccgaggactcgggcgccccgccgctg
gtgcccctggtgcgcgagctgatccgcaacctgtttgtgtcggtgctgggccaccaggac
gaggaggggcgcgtctacagcgactccctggccgagatccccgccgtggacccggaggcg
cccgagaagccggcggtgaacttcgaggtggtgcgggccaacgtggagcgcggacgctac
caccggctggacgtcttccaggagcacatgtttgaggtgctggagaaggcccgccggctg
cacaggaccgacgcggaggccttcgaggatgcggtggaactgcagcagttcttcgtcaag
atccgggacgagctgtgcaagaacggagagatcctcatgtccccggcgctgaactacacg
tccaaacacctgcacagcgacatcgaccaggagaagagggagaagattcccctggagttt
gaggatgacaaacagaagcgagaagaggagagcaaagacgcggataaatccggagagctg
ccggcggaggcgtggcagtcgggcccggagcgcacctacagccaggactgcagcttcgag
aacagcacgtaccgcgtgggcgactttgtgtacgtcacgcccaccgaggccaaccacaag
ccccacatcgtcagcatcgagcgcctctggacggaccaagcaggcgagaagtggctgtac
ggctgctggttctacaggcccagcgagaccttccacctggccacgcgcaagttcctggag
aaggaggtgttcaagagcgactactacaacaaggttcccatcagcagggtccggggaaag
tgtatggtcatgtttgtcaaggactacttcaagctccaccccgagggctaccgggccgag
gacgtgtacatctgcgagtcccgctacacggcgcgcaacaagaccttcaagaagatcaag
gtgtgggccatgccggtgacctcggtgcggctggcccagcgcgacacgcccctgcccgtg
gtgcgcgtggcctccatgttcgccaagcctccccaggagagggcgctgatggacgtgtcc
gacgcggacaaaggaggctgcgtggacaaggagcgggaggacgtcccggtggagatgnac
ggggcggagcccggctgccagtactacgaccagctgcgctacaagaacatgtggctgaag
gtgggggactgtgtctacatccagtcccacggtctgtccaagccccgcgtggccagggtg
gagaagctgtgggtgcagaacggagccaccttcttcttcgggcccatcttcatccacccg
gaggagacggcccacgagcccaccaagatgttctacaagaaggaggtgttcctcagcaac
ctggaggagaccctgcccatgacctgcgtcctgggcaaatgcctggtggcctccttcaag
gactacctgtcctgccggcccaccgaggtgcccgaggacgacgtgctgctgtgcgagagc
cgctacatcgagacggagaagcagatcaagaagttcaagggcctgaagcgcttctctctc
tcggccaaggtggtggaggacgagacctactacttcaggaagctggtggtgccccagaag
gaggcgtctccgctgctgaacaagaagatcgaggagctggagctgaagctggccgacgtg
gaggacggggacgaggacctggaggacctggacgacgacgacgaggccccggccacgccc
tccatgcccctgatgcagacccccgtgacggtcgacctggacngcaccgcgtacacgccc
tcccagtccactcctaagataaagggcatgtccaagaaggagggctccaagaggaagatc
aacnngagcggctacatcctgttcagcagcgagatgcgggccgtcatcaaggcccggcac
cccgacttctccttcggggagctgagccggctggtgggcaccgagtggaggaacctggag
gccaccaagaaggctgaatatgaagagcgggccgccaaggtggtggagcagcaggagcga
gagagggcccggcagcaggcttcccctagagcaggtaccccagtaggggcactgnngggg
gtggtgccctcgcccagcactatgggaatgataaaccagaccatgccgcccgtgtcaggt
atgatggctccagggatgaacggcatggcagggagccctaaccctgggacccactacatg
cagcagcctggtatgtacagccctggtcctcaggctccgcccccataccccggacaacct
ggccaaccggccagccccctgttcgtagcccccccacccaagacccagagggtccttcac
tctgaggcctacctcaagtacatcgaggggctgaactcagacagcggcactgtgagcaag
tgggaccagaccctcaaagcccaaagacgggacgcccacctgaccaaagagcaggagagc
catctgcccagccactggctgaagagcaaaggcgcccaccgcaccatggcggacgcgctg
tggcgtctcagggagctcatgctgagagactcgctgaacatccgccaggcgtacaacctg
tag
DBGET
integrated database retrieval system
