Gadus morhua (Atlantic cod): 115556964
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Entry
115556964 CDS
T10832
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04010
MAPK signaling pathway
gmh04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115556964
04020 Calcium signaling pathway
115556964
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gmh04040
]
115556964
Ion channels [BR:
gmh04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
115556964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
UPF0542
ETRAMP
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
115556964
NCBI-ProteinID:
XP_030230295
LinkDB
All DBs
Position
2:complement(19175161..19380005)
Genome browser
AA seq
2328 aa
AA seq
DB search
MAGGPQVLFLDSQPVSTWFERISIMVILLNCVTLGMYQPCENIHCTSDRCQILQAFDAFI
YVFFALEMVVKMVALGIFGQRCYLGDTWNRLDFFIVMSGMVEYSLDLQNINLSAIRTVRV
LRPLKAINRVPSMRILVNLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWAGLLRNRCYLE
ENFTLSPGLALPGPYYSPDEDDERPFICSLAADNGIMSCGDVPARREGGRTCCLDREDAL
HPPEPGAGARGPGPNGSGPGAGGLCVNWNQYYTRCHTGSGNPHKGAINFDNIVSAWIVIF
QVITLEGWVEIMYYVMDAHSFYNFIYFIFLIIIGSFFMINLCLVVIATQFSETKQREHQL
MQEQRAACLSSSTLASLAEPGDCYEELFQLVCHVLRKARRRSSALYYTLRGQPPPPTGAR
NNRRAGGCAGRGGGGGGGSGGNVNGGRRHSKQLRPSPCPHQPRPTPDQGSPPPLPHSPVP
LSVSPQPEDCPLCALSLKEGAGAAGDSANGEEEEEEEPVEGTEKEQNQLEETREGEGEAG
GGGARGGRGRVRPKRRRRRSRRTCLGRLKDLWDEMRRKLWGIVESKYFSRGIMMAILINT
ISMGIEHHNQPDELTNVLEICNIVFTSMFTLEMVLKLTAFGFFDYLRNPYNIFDGIIVII
SVCEIIGQADGGLSVLRTFRLLRVIKLVRFMPALRRQLVVLMKTMDNVATFCMLLMLFIF
IFSILGMHIFGCKFSLKTEAGDTVPDRKNFDSLLWAIVTVFQILTQEDWNMVLYNGMAST
SPCAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSYSDDDRSSCNFEENDKKDLL
RLSDPKICTLTPNGHLDLPLVPALYPRETLFPGETLYPGETLAWLGARKTSVISLGRSDL
EQRGLYLDRGYHHPHHWGRSLEPRLQALWARRSSWNTYSPSTPTSPTSSPAPSSTEPRPL
YGHAQGRGSLRVRGPRAASSPHHYHHHWGPRDEESLLLQFAPGPLHAQPRKKSCTGGLLI
GGGAGGGALASDHQDCNGKTPLAQLLQPPPLRPAGGGGASSSTQLMAEVFPQVNTRRKDQ
EDLDDETDYSLCFRVQKMLEVYRPDWCETREEWSVFLFSPENKFRQLCQAIIAHKLFDYI
VLAFIFSNCITVALERPKILQGSLERVFLTISNYIFTAIFVSEMTLKVVSMGFYLGEQTY
LRSSWNVLDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVE
TLITSLKPIGNIVLICCAFFIIFGILEYRCGVCLFKGKFFYCFGLDVRNITNRSDCLQAN
YKWVHHKYNFDNLGQGETXQRACALMSLFVLASKDGWVNIMYHGLDAVGLTTRWTNNNPW
MLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEVEEAKRREEKRQRRMEKKRRNAQK
LPYYSSYSRVRLMVHTLCTNHWLDXIITFIICFNVITMSLEHYSQPSLDLVLKYCNYFFT
XTFVLESILKLIAFGFRGFFKERWNQLDLAIVLLSVMGITLEEIEISSALPINPTIIRIM
RVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGELVCN
EDYPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRECPPDDYACNPSLQFISP
LYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAKEEAEMDAEIELELAQGTLCCMGTPGC
GGGGGSAPPEKVCPGGKDRGGGRGGRRGGGTTRAEAGETARHRGTAPPPQHGPLGSSHSS
QKQYSPAQESQWLDSVSLLIKDSLEGEMQMIDNLSGSVFHHYSSPPPVCRDCRVRTQEQI
QMAEIEQASLRSEPQSDKSSSPPPLPDDLSLEEGAGRYQLLLHSDHKAVNQRSLGGSQEN
SDSQSSEEAGGFHQAGDTQTQTQVGLEPPSLISGEAQKEEEVEEEGRALLELMSWRSRQT
SHQQHHQRSPVCQPKPTVHPSLSQGRVEQQGAECRGGRERREGSGDPLSRFRLPVDFFHQ
WRSPNPGPPRRRSLRLTRGLRLTSPATWASLRSPGARNTTLCTQVTPVHSDSSLATGSSX
GSLQTTLEEGLSFSVSPPGTWTPPSPWRLSPSSSPRLRCTGTTPPPPAPPQAPAAFRPHP
PGHQGPQRSQSSGRGSASPGCTREDSMDPSDEDLGIGIGIGPSLGGCGCGQAGNSEHLSE
TLSSLSLTSLLSPGSLAPRGGGVKKCSSTGSLEQGGALLSSRGREGHKGVLGLELMDPQG
FLANPSMGLGDGRGSGGRRGDGGRGGGHESFSLKSSNQTLVGPRRKNR
NT seq
6987 nt
NT seq
+upstream
nt +downstream
nt
atggccggtggcccccaggttctgttccttgactcccagcctgtgtccacgtggttcgag
aggatcagcatcatggtgatcctgctcaactgcgtcaccctggggatgtatcagccctgc
gagaacatccactgcacctccgaccgctgccagatactgcaggcctttgatgccttcatc
tacgtcttcttcgctctggagatggtggtgaagatggtggccctcgggatcttcggtcag
cgctgttacctcggcgacacgtggaaccggcttgacttcttcatcgtcatgtccgggatg
gtggagtactctctggacctccagaacatcaacctgtcggccatcaggacggtccgtgtg
ctccgacctctgaaggccatcaacagagtgcccagcatgcgtatcctggtcaacctgctg
ctggacaccctccccatgctgggcaacgtgttgctgctgtgcttcttcgtcttcttcatc
ttcggcatcatcggggtgcagctgtgggcggggctcctgaggaaccgctgctacctggag
gagaacttcaccctctccccggggctggccctgccgggcccctactactcccctgatgag
gatgacgagcggcccttcatctgctcactggccgctgataacggcatcatgtcgtgcggc
gacgtgccggcgcggcgggagggtgggcggacctgctgcctggaccgggaggacgctctc
cacccgccagagcctggggctggagcccgagggcctgggcccaacggcagcggccccggg
gctgggggcctctgcgtcaactggaaccagtactacacccgctgccacactgggagcgga
aacccccacaagggggccattaacttcgacaacattgtctccgcctggatcgtcatattt
caggtcatcactctggagggatgggtggagatcatgtactacgtcatggacgcccactcc
ttctacaacttcatctacttcatcttcctcatcatcatcggctccttcttcatgatcaac
ctgtgtctggtggtgatcgccacccagttctctgagaccaagcagcgcgagcaccagctg
atgcaggagcagcgcgcggcgtgcctgtcttcctccacgctggccagcctggccgagcca
ggtgactgctacgaggaactcttccagctcgtctgccacgtgctgcggaaggcccgccgc
cgctcatccgcactctactacacactgaggggccagcccccgccgcccaccggggcccgc
aacaaccgccgcgccgggggctgtgcgggcagaggaggaggaggaggaggaggaagcggt
gggaatgtcaacggggggcggcgccactccaagcagctcagaccgtctccctgtcctcac
cagccccgccccaccccggaccagggcagcccacccccgctgccccactcccccgtcccc
ctctccgtctctccccagcccgaggactgccccctgtgtgcgttgtcactcaaagagggg
gccggcgcggcgggtgactcggccaatggggaggaggaggaggaggaggagccggtggag
gggacggagaaggagcagaaccagctggaggaaaccagagagggagagggggaggccggg
gggggaggagccagaggggggagggggcgggtgagacccaagaggaggaggcggaggagt
aggaggacctgcctggggcgcctcaaggacctctgggacgagatgagaaggaagctgtgg
ggcatcgtggaaagcaagtacttcagccgcggcatcatgatggccatcctcatcaacacc
atcagcatgggcatcgagcaccacaaccagccggacgagctgacaaatgtgctggagatc
tgcaacatcgtgttcaccagcatgttcaccctggagatggtcctgaagctcaccgccttc
ggcttcttcgactacctcaggaacccctacaacatttttgatggcatcattgtcatcatc
agcgtgtgtgagatcatcgggcaggcggacggcgggctctcggtgctgcggaccttccgt
ctgctgcgggtaatcaagctggtgcgcttcatgccggcgctgcggcgccagctggtggtc
ctcatgaagaccatggacaacgtggccaccttctgcatgctcctcatgctcttcatcttc
atcttcagcatcctggggatgcacatcttcggctgtaagttcagcctgaagacggaggcc
ggcgacaccgtccccgaccgcaagaacttcgactcactgctctgggccatcgtcaccgtc
ttccagatcctgacccaagaggactggaacatggtcctttataacggcatggcgtccact
tccccctgcgccgctctctacttcgtggcgctcatgaccttcgggaactacgtcctcttc
aacctgctggtggccatcttggtggaaggcttccaagcggagggcgatgccaaccgctcc
tactcagatgacgacaggtcctcctgtaactttgaggagaacgacaagaaagacttgctc
cgcctgtcagaccctaagatctgcaccctgacccccaacggccacctggacctgcccctg
gtccctgcgctgtatcccagggaaaccctgttccccggggagaccctgtaccccggggag
accctggcctggttgggggcccgcaagaccagcgtcatctcactgggccgcagcgacctg
gagcagaggggactgtatctcgaccgggggtaccaccacccccaccactggggtcggtcc
ctggagccccgcctccaggcactgtgggcgcgacgctccagctggaacacctactccccc
tccacccccacctccccaacctcctcccccgccccctcctccactgagccccgccccctc
tacggccacgcccaggggcggggcagcctccgtgtgaggggcccgcgcgctgcctcctcc
ccccaccactaccaccaccactgggggccccgggacgaggagtcgctcctcctgcagttc
gcccccggcccgctccacgcccagccccgcaagaagagctgcaccggggggctgctgatc
gggggcggggccgggggcggggccctggcctccgaccaccaggactgtaacgggaagacc
cccctcgcccagctcctccagcccccccccctgaggccggccggggggggcggggcctcc
tcctccacccagctgatggcggaggtcttccctcaggtcaacacacgcaggaaggaccag
gaggacctggacgacgagacggactacagtctgtgtttccgggtgcagaagatgctggag
gtctacagaccggactggtgtgagaccagagaggagtggtccgtcttcctcttctccccg
gagaataagttcagacagctctgtcaggccatcatcgcccacaagctcttcgactacatc
gtcctggccttcatcttctccaactgcatcaccgtcgctctggagcggccaaagatcctg
cagggcagcctggagcgagtcttcctcaccatctccaactacatcttcactgccatcttc
gtgagcgagatgaccctcaaagtggtctccatgggcttctacctgggggaacagacctat
ctgaggagcagctggaacgtcctggatggcttcctggtgttcgtgtccctgattgacatc
gtggtgtccatggcaggcggggcgaagatcctgggcgtgctcagagtgctccggctgctg
cggacactgcgccccctcagggtgatcagccgggctccgggcctcaagctggtggtggag
acgctgatcacgtccttgaagcccatcgggaacatcgtcctcatctgctgcgcattcttc
atcatcttcggcatcctggagtacaggtgcggtgtgtgtctgttcaaagggaagtttttc
tactgcttcggacttgacgtcaggaacatcaccaaccgatccgactgcctgcaggccaac
tacaagtgggtccaccacaagtacaactttgacaacctgggacagggtgagacatgacag
agagcctgtgccctcatgtccctgttcgtgctggcatccaaggatggctgggtgaacatc
atgtaccacggactggacgcggtggggttgaccacccggtggaccaacaacaacccctgg
atgctgctctacttcatctccttcctgctcatcgtcagtttctttgtcctcaacatgttc
gtgggcgtggtagtggagaacttccacaagtgccggcagcatcaggaggtggaggaggcg
aagcgccgagaggagaagcgccagcgacgcatggagaagaagaggaggaatgcccagaaa
cttccgtactactcgagctacagcagagtccgtctgatggttcacaccctgtgcaccaac
cactggctagacntcatcatcaccttcatcatctgtttcaacgtcatcaccatgtctctg
gagcactacagccagccctctctggacctggtcctgaagtactgtaactatttcttcact
nccacctttgttctcgagtcgatcctcaaactcatcgctttcggcttccgcggcttcttc
aaagaaaggtggaaccagttggacctggccattgtgctgctgtctgtgatgggcatcact
ctggaggagatcgagatcagctccgctctgcccatcaaccccaccatcatcaggatcatg
agggtgctgcgcatcgcacgagtgctgaagttactgaagatggccactggaatgcgcgcc
ctgttggacacagtagttcaagccctgcctcaggtgggtaacctgggcctgctcttcatg
ctgttgttcttcatctacgccgccttgggggtggagctatttggagagttggtgtgcaat
gaggactacccgtgtgaggggatgagtcgtcacgccacctttgagaacttcggcatggcg
ttcctcaccctgttccaagtctccaccggggacaactggaacggcatcatgaaggatacg
ctgcgagagtgcccgccggacgactacgcatgcaaccccagcctgcagttcatctctccg
ctgtacttcgtctccttcgtgctcaccgcccagttcgtgctcatcaacgtggtggtggcc
gtgctgatgaagcacctggacgactccaacaaagaggccaaggaggaggcggagatggac
gctgagatcgagctggagctggcccagggcaccctctgctgcatgggcacgccagggtgt
ggcggcgggggcgggagtgcccccccggagaaggtctgccccggtgggaaggacagaggg
ggggggaggggggggcgccggggcggagggacgacgagggcggaggcaggagagacggcc
cgtcaccgcggcaccgcgccccccccgcagcacggacccctgggctcctcccactccagc
cagaagcagtactccccggctcaggagagccagtggctggacagcgtgtctctgctcatc
aaggactccctggagggcgagatgcagatgattgacaacctgtcgggctctgtcttccac
cactactcctccccgccccccgtctgccgggactgcagggtccgcacgcaagagcagatc
cagatggcggagatcgagcaggcctccctgaggtcggagccgcagtctgacaagtcgtcg
tcgcccccccccctccctgacgacctcagcctggaggaaggcgccggccgctaccagctg
ctgctgcacagcgaccacaaggctgtgaaccagcgttccttaggagggagccaggagaac
agcgactcccagagctcagaggaggcggggggcttccaccaggcaggagacacccagacc
cagacccaggtggggctggagcccccctccctgatctcaggagaggcccagaaggaggag
gaggtggaggaggaggggagggcgctgctggagctgatgagctggaggtccaggcagacc
agccaccagcagcaccaccagaggagccccgtctgtcagcccaagccaaccgtccacccc
tccctctcccaggggcgtgtcgagcagcagggggcggagtgccgagggggacgagaacgc
cgagaggggtccggggacccgctgtcccgcttccgcctaccggtggacttcttccaccag
tggcggtcccccaatcccggcccgccccgcaggcgcagcctgcgtctgacccggggcttg
aggctgacctcgcctgccacctgggcctcgctgagatcccccggggcccgcaacaccacg
ctctgcacgcaggtcacacccgtccacagcgactcgtccctggcaacgggcagctcgnga
ggcagcctgcagaccacactggaggagggcctgagcttcagcgtgtccccgcccggaacc
tggacccccccttccccctggcgcctctccccctcctcttcccctcgcttacgttgcaca
gggacgaccccgccgccgccggcccccccccaggcaccggccgccttccggcctcaccct
ccaggccaccaggggccacagaggagccagagcagcggccgcggcagcgccagcccgggc
tgcacacgggaggactccatggacccctcggacgaggacctgggcatcggcatcggcatc
ggcccctccctggggggctgcggctgcggccaggcggggaacagcgaacacttgtcagag
acgctgagcagcctgtcgctcacctcgctgctctcgcccggctcccttgcgccccgcgga
ggcggcgtgaagaagtgcagcagcacagggagccttgaacaggggggggcgctgctctcg
tcacggggcagggagggccacaagggggtcctgggtctggagctcatggaccctcagggc
ttcctggccaacccctcgatggggcttggggacgggcggggcagcggggggcggcggggg
gacggaggaaggggcggcgggcacgagtccttcagcctgaagagctccaaccagacgctg
gtggggccccgccggaagaacagatga
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integrated database retrieval system
