Gadus morhua (Atlantic cod): 115556998
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Entry
115556998 CDS
T10832
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115556998 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115556998 (smarcd1)
03036 Chromosome and associated proteins [BR:
gmh03036
]
115556998 (smarcd1)
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115556998 (smarcd1)
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115556998 (smarcd1)
PBAF complex
115556998 (smarcd1)
GBAF(ncBAF) complex
115556998 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
115556998
NCBI-ProteinID:
XP_030230375
Ensembl:
ENSGMOG00000013135
LinkDB
All DBs
Position
13:complement(13636197..13650091)
Genome browser
AA seq
513 aa
AA seq
DB search
MAARGGFQSAPTGGGGGGMGPGPPVPGGGPGMGPGTPGRMGPSPGAQNHMYRSPMPGPGY
PRPGMPPSNRMTPQGPAMGPPGYGNSPVSRPGMPGGMDPSRKRPAPQQIQPVQQQNRNQH
TKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKL
RIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLVI
ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRLA
RMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRLH
ALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLDN
KIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFY
FQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagaggtggttttcagtcggcaccgacaggaggtggcggcggtggaatgggt
cctggaccaccggtaccgggtggaggaccaggtatgggccctgggacacctggaaggatg
ggaccctcgccaggcgcgcaaaatcatatgtaccgttccccgatgcccgggcctggatac
ccgagacctggtatgcccccatccaatcggatgactccacagggccctgccatggggccc
ccaggctatggtaacagtccggtatcacggcccggcatgcccggcgggatggacccttct
cggaagcgtcccgctccccagcagatccaaccggtgcagcagcagaaccggaaccagcac
acaaagaagaagaagatggctgataaaattctacctcaaaggatcagagagctggtgcca
gagtctcaagcctacatggatctgcttgccttcgagaggaagctggaccagaccatcatg
cgtaagaggctagacatccaggaggcactcaagaggcccattaagcaaaagagaaagctg
cgcattttcatttccaatacattcaaccctgccaagccagacgctgaggatggggagggc
accgtggcctcctgggagctacgggtggaagggcggctgctggaggacacggctgtgtcc
aagtatgaagctaccaagcagaagagaaagttctcctccttcttcaagtccctggtcatc
gagttggacaaagacctgtatgggcccgataaccacctggttgagtggcacaggacggcc
accacacaggagacggatggtttccaggtgaagaggccaggggatgtgggcgtccgctgc
accgtcctgctaatgctggactaccagcccccacagttcaagctggaccccagactggct
cgtatgctggggattcacacccagaccaggcccgtcatcatccaggccctctggcagtac
gtcaagacccacaagctccaggacccccacgagcgcgagttcatcaactgtgacaagtac
ctgcagcagatctttgagactcagcgcatgaagttctctgagatcccgcagcgtctacat
gccctcctgatgcccccagagccaatcatcatcaatcatgtcatcagtgtcgaccccaat
gaccaaaagaagactgcatgctacgacatcgacgtggaggtggacgacactctgaagact
cagatgaactcctttctgctgtctactgccagccagcaggagatagctggactggataac
aagatccacgagaccatcgagactataaaccagctgaagacccagagggagttcatgctg
agcttcgccagggacccccagggcttcatcaacgactggctgcagtcccagtgcagggac
ctcaagaccatgacggatgtggtgggcaacccagaggaggagcggcgggccgagttctac
ttccagccttgggcccaggaagccgtgtgccgctacttctactccaaggtccagcagagg
agacaggagctggagcaggctttgggcattaggaacacctag
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