KEGG   Gadus morhua (Atlantic cod): 115557245
Entry
115557245         CDS       T10832                                 
Symbol
poc1a
Name
(RefSeq) POC1 centriolar protein homolog A
  KO
K16482  centriolar protein POC1
Organism
gmh  Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:gmh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:gmh03036]
    115557245 (poc1a)
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:gmh03037]
    115557245 (poc1a)
Chromosome and associated proteins [BR:gmh03036]
 Eukaryotic type
  Centrosome formation proteins
   Centriole proteins
    115557245 (poc1a)
Cilium and associated proteins [BR:gmh03037]
 Primary cilia and associated proteins
  Other primary cilia associated proteins
   115557245 (poc1a)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_SCAP WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_RIG_2nd Ge1_WD40 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_DCAF4 Beta-prop_NWD2_C PEP5_VPS11_N PROPPIN RMC1_N Beta-prop_DCAF12 Beta-prop_WDR75_2nd Beta-prop_IP5PC_F Cytochrom_D1 Beta-prop_Nup120_160 Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 115557245
NCBI-ProteinID: XP_030230772
Ensembl: ENSGMOG00000003598
LinkDB
Position
13:19892085..19922349
AA seq 464 aa
MSTALSDPSLERNFKGHKDSVTCVDINCNMKQIATGSKDSCVMIWNMKPQMRSYRLAGHK
DAVTCVHFSPSGHLVASASRDKTVRLWVPSLKAESTSFRAHIGTVRSVNFSADGQSLVTA
SDDKTIKVWTVHRQKFLFSLSQHINWVRCAKFSPDGRLIVSSSDDKTVKLWDRNSRECVH
SFYEHAGYANHVEFHPSGTCIAAASTDNSVKVWDIRTHKMLQHYPVHSGAVNSLSFHPSG
NFLITAANDSTLKIMDLLEGKLLYTLHGHQGPASCVAFSRTGEYFASGGNDDQVMVWKSN
FDCTTCEDVRFQHNTAPGQQGISANSTAHVPHPSRAPKPRSQTCSVAEVSNTTEWHTVSH
PHNPGPSSHNKTAHSQSIRAPSIHQPPPQARASSPEHQAQTQTSDGGVSSALSSTLERIV
NQLDILTQTVSILEQRLTLTEDKLKECLENQVDIVQQQQLHSQG
NT seq 1395 nt   +upstreamnt  +downstreamnt
atgagcactgcgttgtcggaccccagccttgaaaggaatttcaaaggccacaaggacagt
gtgacatgtgtggacatcaactgtaacatgaaacaaattgccacgggctccaaggactcg
tgtgtgatgatctggaacatgaagcctcagatgaggtcgtatcgcctggcagggcacaaa
gacgccgtcacctgcgtccacttctctccctcgggtcacctggtggcctctgcctccaga
gacaagactgtacggctctgggttcccagtctgaaggctgaatccacgtcgttccgcgct
cacataggcaccgtgcgaagcgtcaacttctcggccgacggacagtcgctggtcacagcg
tccgacgacaagaccatcaaagtgtggacggtgcacagacagaagttcctcttctccctc
agtcagcacatcaactgggtccgctgtgccaagttttctccagacggccgcttgattgtg
tcgtcaagcgacgataaaaccgtgaagctgtgggacaggaacagcagggagtgtgtccac
tctttctacgagcacgcaggctatgcaaaccatgtggagttccaccccagtgggacgtgt
atcgcagccgccagcacggacaattcggtcaaggtgtgggacatacgcacccacaagatg
ctgcagcactatccagttcacagtggtgccgtgaacagcctgtctttccatccatctgga
aacttcttgatcacggctgccaatgattccactttgaagataatggaccttttagaggga
aaactcctctataccctccatggacatcagggccctgcctcttgcgtggcgttttcccgg
accggagagtactttgcctctggcggtaacgacgaccaggtgatggtctggaagagtaac
tttgactgtaccacgtgtgaggacgtcaggttccagcacaacacagcacccggccagcag
ggcatctcggccaactcaacggcccatgtcccccacccctcacgggccccgaagccccgc
agtcagacatgcagtgtggcagaggtcagcaatacgaccgagtggcacaccgtctcccac
cctcacaaccccggtcctagcagccacaacaagaccgcccactcccagtccattagggcc
cccagcatccaccagcccccaccccaggcccgggccagcagccccgagcaccaagcccag
acccagacctctgatggtggggtctcttcagccctgtcaagcactctggaacgcattgtg
aaccaactggacattctcactcagacggtgtccatcctggagcagaggctgaccctgacg
gaggacaagctgaaggagtgcctggagaaccaggtggacattgtccagcagcagcagctc
cacagccaggggtag

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