Gadus morhua (Atlantic cod): 115558220
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Entry
115558220 CDS
T10832
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
gmh01001
]
115558220 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
gmh04054
]
115558220 (ciita)
Enzymes [BR:
gmh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
115558220 (ciita)
Protein kinases [BR:
gmh01001
]
Serine/threonine kinases: Other
TAF1 family
115558220 (ciita)
Pattern recognition receptors [BR:
gmh04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
115558220 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
AAA_16
LRR_14
AAA_7
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
115558220
NCBI-ProteinID:
XP_030231985
Ensembl:
ENSGMOG00000026611
LinkDB
All DBs
Position
2:complement(27003525..27017553)
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AA seq
1162 aa
AA seq
DB search
MQDCPAGDGEHGGEPNQPSDIEELPAVKVSARNGVDFNLTVALTSVMIKTMIRTFILVDW
DVEEMEEFLATFTDQDSLFELAKSNSVSTEVQETPDANAGLAGGDAVVSASDPESASTTS
TPPSSSLPLHPPLQMPLQFITLGHADGCQRPTLTISQHSLIALALSGSAASTTTYILVPT
TSPPPVPTPSPASDAVAPLLLVSAPQGSISGDAGAGPAPQFPPTERVEDYIVKAKAQMEK
TCLQLEGGLNLRSHYVDTLLVRRDVLRLKKKGSACLEELLAHMGDTARQKASLRRSQIFG
SSAGSKPNRSVLVLGHAGTGKTALIQSLGLDWSTGSFPQFDFFFVLDGKGLALTKPAFSL
PTMLLGGLFPGRALCLDPHQVFSRVAAAPERVLVVFDGFQEAWHLESLLQPLDKSLVADL
QKDSRKQAFTVRELYCALLQRALLPGCTLMIAARPRGATGNLRRWADSLFELGGFSPTEA
DGALSRYFSEPTSHDNALTRLRSSPYLSSLCWNPALFRLVCFVLEHCDHRETLPDTLSGL
CHRALRIKLARQFEDRSSHDPSPAPSRVKLESAVPGGSGSLKHGKVKKVNQKRLTRSCNR
EAGTTGDKVKEKGTSERKKIKSNGGRDEEGLLAELSRLAWEGVRQNDLPPGGGSTATARE
VGLKAELFHALHLGGKPKGDSRQGEGGVQAGQMESADTEGNAGGEVGRRGSEERKNPRRR
AKSDEDFEDVSDGSHVLSWSNPFLQSFLAGLHISSTRKTSGLLKTFPMQVGLGRGRRRTH
KEELDLVQRFAIGTLFMHASVSRESPSKQSVLVKHLKGHLGQAEHGAAHLLEVCHCIYET
GISRADTHWGTLLAGVLPKEMSFRGVRLWPSDVHVVGKVLELVGAGTGGAGICLGLEDTG
IRTSGILSLLGLSNIASYRACTADVISMWEELEGKEELKLKGAMSKFKLNTKATQVCHVD
DLARLVSMHRRLTDSSSQSDSLLVSGVPAVKELDKLEFELGPEDCPLALPKLWSLLPGLN
NLRHLDLEKSELGDEGAEALAEVLVSLSRLEILNLSQNGIGDTGMYELSLVLMNPASLRC
LSLYSNIISDVGAHWLATVLPLMVSLTDLDVKYNNLTDVGAQSLGAVLKKCPSVKSLRMW
NTCISFAVFERLQKQDSRIVCH
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgcaggactgcccggcaggggatggggagcacggaggagaaccaaaccagccctctgac
atcgaagagcttccagcggtcaaggtctctgcacgaaatggtgtcgactttaatctgacc
gtagccctcacttccgtgatgattaaaacgatgatccgtacattcattttagttgactgg
gatgttgaagaaatggaagaattcctggctacattcacagaccaagattccctctttgag
ttggccaagagcaactctgtctccacagaagtccaagaaaccccagacgccaacgcaggt
ctcgccggcggagatgcagtggtttcggcgtccgatccagagagtgcatcgactacctcc
acgcctccctctagtagcctgccgctccatccacccctccagatgcctcttcagttcatc
accctgggtcacgcagatggatgtcagcgtcccactttgaccatttctcagcattccctg
attgcccttgcactgtccggttcggccgcgagcacaacaacatacattttggtgccgact
acatcaccgccccctgtcccgaccccttcccccgcgagtgatgcggtggctccactcctc
ctggtgtccgctccacaagggtccatctcaggcgatgctggggcaggcccggccccccag
ttcccccccactgaacgcgttgaggattacatcgttaaggcaaaagctcagatggagaaa
acctgcctgcaactggaggggggtctcaacctgcgctcccattacgtggacacactcctg
gtccggagggacgtcctgcgcttgaagaagaagggcagcgcgtgcctggaggagctgctg
gcccacatgggggacacggccaggcagaaggcctccctccggcggagtcagatctttggg
agctcggctggatccaaacccaaccgttcggtactggtccttggccacgccgggacaggg
aagacggccctgatccagagcctgggcctcgactggtccactggctccttcccccagttt
gacttcttcttcgtgttggacggtaaaggcctcgctctgaccaagcccgccttcagtctg
ccgaccatgctgctggggggtctcttcccggggagagccttatgcctggacccccatcag
gtcttcagtcgggtcgccgcggcccccgaacgggtcctcgttgttttcgacggtttccaa
gaggcttggcacctggaatctctgctgcagcctcttgacaagagcctcgtggccgacctc
cagaaggactccaggaaacaggccttcaccgtgagggagttgtactgcgccctgctccag
agggctctgctgcccggctgcaccctgatgatcgcggctcggccacggggagccaccggc
aatctcaggcgctgggctgacagtctctttgagctcggcggattcagccctacagaggca
gacggagctctgtcccggtacttcagcgaacccaccagccacgacaacgccctgacccgg
ctacggagcagtccgtatttgtccagcctttgctggaacccggccctctttcgtctggtg
tgttttgtgctggaacattgcgaccatcgcgagacccttcccgacacactcagcggactt
tgccatcgagccttgagaataaagttggcgcggcagtttgaggacaggagtagccacgat
ccgtcgccggccccctcgcgggtcaagctcgagagcgccgtaccggggggaagcgggagt
ctcaaacacggcaaagttaagaaagtcaaccaaaagaggcttacccgctcctgcaaccga
gaggccgggactacaggcgacaaagtaaaagagaaggggacgtcggagcgaaagaagata
aaatcgaacggcggaagagacgaggaagggctgttggctgaactgagccgcttggcgtgg
gaaggggtccgacagaatgaccttcctccaggaggaggctccacggctacagcgagggag
gtcggcctgaaggctgaactcttccacgccctccatctaggggggaagccgaagggagac
tcacgacagggggagggaggagtgcaggcagggcagatggagagtgcagatacagagggc
aatgcaggaggggaagtaggaagaagggggagcgaagaaaggaaaaaccccagacgaagg
gcgaagagcgatgaggattttgaggatgtgagtgatggtagccacgttctgtcatggtcg
aaccctttcctccagagcttcctggcaggtcttcacatatcatccacaaggaagacgtct
ggactcctgaagaccttccccatgcaggtcggcctggggaggggtcggcgaaggacccac
aaggaggaactggaccttgtgcagaggttcgccatcggcactctctttatgcacgccagc
gtctcccgggagtccccctccaagcagtccgtcctcgtcaaacacctcaaggggcacctg
ggccaggctgagcatggcgccgcccacctgttggaggtgtgccactgcatctacgagacc
ggcatcagccgcgcagacacccactggggcacactgctcgccggggtcctcccaaaggaa
atgagcttccggggagtgaggctgtggccgtccgatgtgcatgtggtggggaaggttctg
gaacttgttggagctgggacaggaggggcggggatctgcctgggacttgaggatactggg
atacggacgtctggaattctgtcgctactggggctcagcaacatcgcgtcgtacagggca
tgcaccgcggacgtcatctccatgtgggaggagctggaaggaaaggaggagcttaaactt
aaaggagccatgtccaaattcaagctgaacacaaaggctacccaggtgtgtcatgttgat
gacctagcacggctggtcagcatgcacaggaggctgactgacagctccagccaatcggat
tcgctcctggtgtccggggttccggcagtgaaggaactagacaagctggagtttgagcta
ggtccagaggattgccccctggctctgcctaagctgtggtcactcctgcccggcctcaac
aacctacgccatcttgatctggaaaaaagtgagctaggagatgaaggagctgaggcactg
gctgaggttctggtttctctctcccgacttgagatcctaaatctatcccagaacggtatt
ggagacacagggatgtatgagctgtctctggtcctgatgaacccagcgtcactgcgttgt
ctcagtctgtacagtaacatcatctccgacgttggtgcccactggctggccacagtcctg
cctctgatggtgtccctgactgacctagacgtgaagtacaacaacctgacggacgtcggg
gcccagagccttggagccgtcctgaagaagtgtccctccgtgaaaagcctgaggatgtgg
aacacgtgtatctcatttgcggtatttgaacgacttcagaaacaggacagcaggattgtg
tgccattag
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