Gadus morhua (Atlantic cod): 115558255
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Entry
115558255 CDS
T10832
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04148
Efferocytosis
Brite
Membrane trafficking [BR:
gmh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115558255 (tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
115558255
NCBI-ProteinID:
XP_030232049
Ensembl:
ENSGMOG00000005877
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All DBs
Position
14:complement(15071743..15087632)
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AA seq
890 aa
AA seq
DB search
MSVKAFELVPAVERDLLMGDKARINVECIECCGKHLYVGTNDCFIHHFLLEEVPSQKGGI
KYSAQKLQQKYLGLKKPVAELRAASALERLIVLCDGVLFLVDMATLETVPSATGSGGAKI
KGVTSFCMNGNPVNTDPFCVEIAVISSRRRTVQVYTVYEDRVQLVKEVTTAEQPSVVSLD
GYFLCLALASQYMILNYTTGASQDLFPYNSEERRPIVKRIGREEFLLAAPGGLGMFANAE
GVSQRAPVNWSESVIGAAVCFPYVVALDQDFISIHSMLDQQLKQSLAFRDGHILQDFEGK
VVLASTKAVYVLVPLPLEQQIQDLLSGDRVEEALVLTEGAQPNIPRDRFQILHRRILQQA
GFIQFGQLQFQEAQEYFRKGELDVRELISLYPLLLPPTSSFTRCHPPLHPFADLNHLAQG
DLEKVLRCKRFLISYLGSVRGTEASRASREEVDTALLKLYAEQDHESLLDLLASDNTCLL
ADSSPWLEKHSKFFALGLLYRCNGQDSAALQLWIRVADGELQDSTRPDLYEYIVDFLTFC
PNLDLVWRYSDWALKRDPKVGVQIFTKRSSGKDQSGQPMPDDVITYLEKHSPARLLYLEH
LVLERRIKKEKFHSLLAVLYLEQVLSLLEGAPPPAPGQLSLARERLQALLRESNLYRVQL
LLGKMEGCDQLLLERATLHGKLEDHGKALDILVHQLQDYSSAEAYCLWASSSSSQGAACR
QQLLHLLLDMYLGGGAEERRGDLEMAAVDLLNRHGERFDAVRVLSVLPEGWSLQLLKPFL
GRAVRTSVHASRTSRLALGLSRAENLQLLHDRLKERKKPILVSEKRGCHLCHNTFSCPDV
VCLPGAVPVHTHCIAHRLSDSALNTHADSAPSKHVDSAPNKNSTQNSNHT
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcttttgagctggtgcctgccgtggagcgggacctgctgatgggggac
aaggctcgcatcaatgtggagtgtattgagtgttgtgggaaacacctgtacgtgggcacc
aacgactgctttatccaccacttcctgctggaggaggtgccctctcagaaaggcgggata
aagtactcggcccagaagctgcaacagaaatacctgggccttaagaaaccagtcgcagag
ctccgtgccgcctcagccttggagcgcctcatcgttctctgtgacggcgtgctgttcctg
gtagacatggccacgctggagacagttccctcagcaacgggctcgggcggggccaagata
aaaggcgtgacgtctttttgcatgaacggaaacccggtgaacaccgacccattctgtgtg
gagatcgcggtgatctcgtcccgacggcgcacagtgcaggtttacactgtgtacgaggac
cgcgtgcagctggtgaaggaggtgaccacagcagagcagcccagcgtagtgagcctcgac
ggctattttctgtgccttgcactggccagccagtacatgatcctgaactacaccactggg
gcctcgcaagacctcttcccctacaacagcgaggagaggaggcccatcgtcaagaggatc
ggcagggaagagttcctcctggctgcgcctggtggccttgggatgtttgccaatgcggag
ggcgtgtcccaacgtgcgccagtcaactggtcggagagtgtgattggtgcagccgtgtgt
tttccatatgtggtggccctggaccaggacttcatctccatccatagcatgctggaccag
cagctcaaacagagcctggccttcagggacggacacatcctgcaggactttgaaggtaag
gtggtgttggcctccaccaaggcagtgtatgtgctggtcccgctgcccctggagcagcag
atccaggacctgctgtctggagaccgcgtggaggaggccctggtgctgacggaaggagcc
cagcccaacatccccagggaccgcttccagatcctgcatagaaggatcctacagcaggct
ggctttatccagtttggacagctccagtttcaggaagcacaagaatacttcaggaaagga
gagctggacgtcagggagctaatctccctttaccccctcctgctgccccccacgtcctcc
ttcacccgctgccaccccccactgcaccccttcgcagacctcaaccacctggcccagggc
gacctggagaaagtgctgcgctgcaagaggttcctcatctcctacctaggatcggtccgt
ggtaccgaggcctccagggcgtcccgggaggaagtggacacagcgctgctgaagctgtat
gctgagcaggaccacgagagtctactggacctgctggcctcagacaacacctgcctgctg
gctgacagctctccctggctggagaaacacagcaaattttttgccctgggtctcctgtat
cgctgtaacggccaggattctgctgctctgcagttgtggatccgtgtggcggatggggag
ctgcaggactcgacccgaccggacctgtatgaatacatagtggacttcctcaccttttgt
cctaatctggacctggtctggaggtacagcgactgggcattgaagagagaccccaaggta
ggagtccagatcttcaccaagaggtcttctggcaaggaccaatcgggtcagccaatgcct
gatgatgtcatcacttaccttgagaagcacagccctgcccgcctcctatacctggaacac
ctggtgttggaaagacgcattaagaaggagaagttccacagcctccttgccgtgctgtac
ctggagcaggtgttgtctctgctagagggcgctcctcccccggccccaggccagctctcc
ctcgcccgggagaggcttcaggccctcctcagggagtccaacctctacagggtccagctt
ctactaggtaagatggagggctgtgatcagctgctgctggagcgtgccacgctccacggg
aagctggaggatcacggaaaggcgctggacatcctggtccaccagctccaggactacagc
tcggcggaggcctactgcctctgggcctcctcctcctcctcccagggcgcagcctgcaga
cagcagctcctccacctccttctggacatgtatctaggtggaggtgcagaggagagacga
ggagacctcgagatggccgccgtggacctgctgaaccgtcacggcgagcggtttgacgcg
gtgcgcgtgctgagcgtgctcccggagggctggtccctgcagctgctcaagcccttcctg
ggccgggctgtgcgcaccagtgtgcacgctagcaggacgtctcgcctggcgctgggcctg
tcccgtgctgagaacctgcaactgttgcacgacaggttaaaggagcggaagaagcccatc
ctggtgtctgagaagcggggctgtcacctctgtcacaacacattcagctgccccgacgtg
gtctgtctgcccggcgctgtccccgtacacacacactgcatcgcacacagactgtcagac
tccgccctcaacacgcatgctgactccgcccccagcaaacacgtggactctgcccctaac
aaaaactcaacgcagaacagcaatcacacgtaa
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