Gadus morhua (Atlantic cod): 115558721
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Entry
115558721 CDS
T10832
Name
(RefSeq) LIM domain only protein 7-like isoform X1
KO
K06084
F-box protein 20
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
115558721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gmh04121
]
115558721
Ubiquitin system [BR:
gmh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
115558721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CH
DUF4757
PDZ_2
PDZ
PDZ_6
DUF6288
Motif
Other DBs
NCBI-GeneID:
115558721
NCBI-ProteinID:
XP_030232964
Ensembl:
ENSGMOG00000002351
LinkDB
All DBs
Position
14:15543020..15582749
Genome browser
AA seq
1226 aa
AA seq
DB search
MEWREQTSVSCMDAFEETKRWIEKVTSKSFESSNFRAALENGVLLCDLMNKLKPGIIKRL
NRLSTPIAGLDNVNVFLKACSKLGLNESQLFHPGDLQDLSTRVTLRSEESNRRLKNVLIT
VYWLGRRAQLEPFYCGPQLNFKAFEGLLGLTLSKALEEGSGLCPRDGGYGDPEKENLYHV
RPAYRRDDSVEGGNYLDHHSAHQRSEGCGSDVEADQLFSMSAQKDSAQQQERGYVPPVEG
AYPLPREGGCIAPAPLRRKKGCEENKQGLLTRVSQIQLRPGRPPQVNPGWIWSKSTTDIP
MESPGYQDDGQNLGGPDVSRPSRPPNGARSKESVEKWQEDLTKWKNRRRSTNSDLHRKVE
ERNHDVNETTRGTRATVGQNKTANGDQLSPSVPGPASSHSSRASRPALSRSYTVETRLRD
PLPNKASSSCSPVQNQPLSGAMPASHRPLLGEEVPSASLASDGNASSTATTPSTCSPYTS
QTLIKLQPGPTAGQTQTGGRGRRTTMGPVPYSGIGTVDRTPYSPQVTDRKITILHHGPFL
QRRDVTQQNHCSLNTAEPGAGEEAGGLVNGPTHHSFLHRYNSMPWSGSASLPRGYRRSEG
SARLSNVLTARPFGTRPSRKSSLLSTGSDYKTLPLSGDMQAPQPILNRQVATSLIRAPRQ
AAEKQEVENQAEKERDREEGGHTNGLPYCSQPPFKTLSQTHLSPPAIHAAPQKRMRVSLS
LTPNSVDDFGFQTDWSATGARVTSVQQGSPAELCQLCVGDVITTLGGAKVEQLSSSQWES
TMTSALQSGSLTMDVSRYSNQGCPENHVHKDIMTLPTGPDLHAQGLGIQTRNGEFEGTRK
TASTKELERIVLRNKRRRAEFFDVKGGTESAISDLQVPSLKPSSSNWSWDHEEERKRQER
WQEEQERHLQERYQRDQKRMQAEWQSAQEGTGEEPRGTDERPVWLDDPGVVIPTSLTRPV
VQRQAPHWEADGSVRHQNKGTGSAGVQYSDPAPVGHPTPTDLAGFRPLGTEAGSKPRSLE
AEKDKRAEPDFFRPTGSGGFTQLYSAYRGMSKSTPTLASDHRQTKGPGEQKKGKVATASK
EEQNRQQILEEMKKRTQLLTDNSWIRQRRASSLKEPLYTGGTLRRYESLDSLHTAPPSEP
PCELSGPRSLSGSSGRSVYPRYTTCPTPPDQLPSCPVALSQHSFPDASCIPGKAPGDCAV
PSISEERDQKFRAETTSLSASVATSS
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgggagcagaccagtgtcagctgcatggacgccttcgaagagactaagcgg
tggattgagaaagtgaccagtaagtcgtttgaaagtagtaacttccgtgctgctctggaa
aatggagtcctactctgcgatttgatgaacaagttgaaacctggcattatcaagaggctg
aacaggctttcaaccccgatcgccggattggacaatgtgaatgtgttcctgaaggcctgc
tctaagctgggtctgaacgagtctcagctcttccaccctggagacctccaggacctttcc
accagggtcaccctcaggagcgaagaaagcaataggcgactaaagaacgttctgatcaca
gtgtactggctgggtcgccgggcccagcttgagcccttctactgcggcccacagctcaac
ttcaaggccttcgagggcctgctgggcctgacgctgtctaaggccctagaggaaggcagc
ggcctgtgccccagagacgggggctacggcgacccggaaaaggagaacctgtatcacgtc
agaccggcttaccgcagggatgactcggttgagggtgggaattatctggaccaccacagc
gcccaccaaagaagtgaaggctgtggcagtgacgtggaggctgaccagctgttcagtatg
tcagcccagaaggactcagcccagcagcaggagaggggatatgtccccccagtagaggga
gcctaccccctacccagggaggggggttgcatcgccccagcgccacttcgcaggaagaag
ggatgtgaggagaacaaacaaggcttactcaccagagtctctcagattcagctccgtccg
ggtcgaccgcctcaggtcaaccctggctggatttggagcaaatccacgacggacatcccc
atggagtccccgggctaccaggatgatgggcagaacttggggggtcctgacgtcagcagg
ccaagtcgccctccaaacggtgccaggtccaaggagagcgtggagaaatggcaggaggat
ttgacaaagtggaagaaccgacgtaggagcaccaattctgacctccacaggaaggtcgag
gaacgaaaccatgatgtcaacgagacgaccagggggactagggcgaccgttggacagaat
aaaacggcaaacggagaccagctgtcgccttctgttcccggcccagcctcctcccattca
tccagagcctctcgcccagcactctctcggagttacacagtcgagacccggctcagagac
cccttgcccaacaaagcatcctcctcatgtagccccgtccagaaccagcccctgtctgga
gccatgcccgcctctcaccgccctctgcttggagaggaggtcccttccgcttcattggcc
tccgacggcaacgcctcctccaccgctaccaccccctccacctgcagtccttacacctcc
cagaccctcatcaagctccagcctggtcccactgctggacagacccagaccggcgggagg
ggtcgtagaaccactatggggccggtcccgtattcgggcattggcacggtcgaccgtaca
ccttactcaccgcaggtcacggaccgcaaaatcacaatcctccatcacgggccgttcctc
cagcggagagacgtgacccagcagaaccactgctctctgaacactgccgagcctggagcc
ggggaggaggcgggaggtctggtgaacgggccaacgcaccacagcttcctccacaggtac
aactctatgccctggtcgggctcggccagcctccctcgagggtaccgccgctctgaaggc
tcggcacgcctatcaaacgtcctcacggcccgccccttcggtaccaggccctccaggaag
tcctcactgctcagcacaggaagtgactacaagaccctcccactgagcggtgacatgcaa
gctccccagcccatcctgaaccgtcaggtcgcgacctccctcattagggctccccgccaa
gccgcagagaaacaggaagtggagaaccaggcagagaaggaacgtgacagggaagagggt
ggacataccaacggtcttccctactgcagtcaaccaccctttaaaaccctttcccaaaca
cacctgtctcctccagccattcacgccgcaccacagaagcggatgagggtgagtctgagc
ctgacacccaacagtgtggatgacttcggtttccagacagactggagcgccactggagcc
agagtcacctctgttcaacaaggcagccctgctgagctttgccagctgtgcgtgggtgat
gtcatcaccacattaggcggagccaaggtggagcagctgagctccagccaatgggagagc
actatgacgtcagccctgcagtccggtagcctcaccatggacgtcagtcgctatagcaac
cagggctgtcctgaaaaccacgtccacaaagacatcatgaccctgcccactggccctgac
ctacatgcccaggggttgggcatccaaaccaggaacggagaatttgaggggacacgaaag
accgccagtaccaaagaacttgaacgaattgtactgagaaataagaggcggagagcggag
ttttttgatgtgaaaggaggtactgaatcagccatatctgaccttcaagttccgtctctg
aaaccgtcttcctcaaactggtcctgggaccacgaagaagaacgcaaacgtcaggagcgc
tggcaggaggagcaggagcgccacctacaggagcgctaccagcgggaccagaagcggatg
caggccgaatggcagagcgctcaggaggggacgggagaggagccgagggggacagacgag
aggccggtctggctggacgatcctggtgttgtcatacccaccagcctaaccagacctgtc
gtccaaagacaagctcctcactgggaggctgatggttcagtcagacaccagaacaagggg
acgggatctgccggtgtccagtactcagaccctgctcctgtcggacacccgacccctaca
gacctggctggctttaggccccttggtacagaggccgggtcgaagcctcgcagtctagaa
gcggagaaggataagcgggctgagcctgacttcttcaggccgacgggttctggtggattt
acccagctctattcagcgtaccgcgggatgtcaaagtccaccccgacgctggcttctgac
cacaggcagaccaaaggccccggggagcagaagaaggggaaggtggcgactgcgtcaaag
gaggagcagaacaggcagcagatccttgaagagatgaagaagaggactcagctgctgacc
gacaacagctggatccgccagcgcagggccagctccctcaaagagcccctctacactggt
ggaaccctcaggagatacgagtctctggacagcctccacactgcccctccctcggagccc
ccctgtgagctgtcgggccccaggtctctctctggctcctctgggcggagtgtctacccc
cggtacaccacctgcccgactccacctgaccagctccccagctgccccgtcgccttgtcc
cagcactcattccctgacgcctcatgtatccctggaaaagctcctggtgattgtgctgtg
ccgagcatctcggaggagagggatcagaagttcagagcagagaccacaagtctttctgcg
agtgttgctacatccagctga
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