Gadus morhua (Atlantic cod): 115559536
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Entry
115559536 CDS
T10832
Symbol
tnrc6a
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
gmh Gadus morhua (Atlantic cod)
Brite
Messenger RNA biogenesis [BR:
gmh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115559536 (tnrc6a)
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115559536 (tnrc6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
115559536
NCBI-ProteinID:
XP_030234214
Ensembl:
ENSGMOG00000027023
LinkDB
All DBs
Position
2:25938784..25989007
Genome browser
AA seq
1857 aa
AA seq
DB search
MAPIRDSVSHSPNQTGLEHPGLDSQYEPSPWSTGSPCGGDGNSNWDAVLVEGSADKPSNL
SSTNSSVWPSSSSSSSSSGCGSGSDPELASECMDADSSSPLGSERNLAAVSTTTAAMMSL
ANASAASSSSSAAAPSSVSTAAASALVNGDGNANRQTSGGAHNGNNNNNPCGPSSHYSMA
GVGSNNGVGGGQGNRLVGSSVWGAQPAGNPSDGGGGGGGLNPSTLNPLANHGAWPRSPTP
NPAPCPGQRPPQAPGAASKSGAAPPHDGWGDMPAQGACGPMDEGPGARGAATGGGSDGQQ
SPHPHTESNGPNNTMMLNTTTTTTTNATGTSSLPNSTGDGPWGSAPGPAGGPLANGPPTL
APHGETARGPGAFGTPWGAPTHPGDKGPAGPDTVNPQHQAGPPAAHKSYHHAGAPRWEQG
PGGSPAPVPSGMPWGSASSPAPGPGGQGPRPWGGGASSSSSSSSTSSGSHNKTTNGEWGA
MPPGNNHAADAGVRKASSSNNGWKSLEDDALGVGGGGPPAAPAPGAWGRSGGSEGSGESS
GGRSGSDKDGQPRGPNRRRPPPPAAAPPAPPARADVDPRVLSNTGWGQTPVRQNTTWDVN
SPASHPPPGPRGEDRKPGGGGSGWAGGQPVAPSQTSSGGWREGPGNSGPDKGGPGWGEPR
PNPGWDNNTKGGGSGGHGGRDDASSYKGGSGNTWSNNPSRDDRSNTWTNAPRQPRQQQGW
GGGGGGEGWGNGGGGDSSSSSSYRGGSNNHWGDAQKGGGGGGGGGGAWEGDSDRSGSGCW
SDPSRANANNGGGGGGNTWTGSSAANTQDQGNHNQGSNSWGDPTGPKPAPQGRGQGWGEP
QKHHHGNQSWGEPPPKTSNPSNEWGKGPEPVARGGQGPTKPTGWMGGPIPAGCQREKEEP
AATSGSGWEEPSPESIRRRMEIDDGTAAWGEPGRNPGKYNAGGPSNTWNKNSQSEQEPMS
HGPPPGHQLHQSQGPIHAPQPMQTQAPEKTSSAGWGEYPAHKEPSSWGETPAPAPSVSVD
NGTSAWGKPVDSGVGKNGGGGGGGGGGAPNWGEEHARDQPSGREPGPGWGGGGQQQKTGV
KPMETWGGDDQSSSWDQEEEVEIGMWSNTGGQQDSRSHDHNTWNYKQKGPNKMHKSVSKQ
DEPWMKPFTNQFNNMNFPRDSPDDSMKPGGGGMGQDKRMDMGPMGDYNGMMGKGHGPRHQ
LHKDPPIDRGPYYDKNVNPMLGGSSLAQGRGPQLPPQTNLRNQVPPPILPSQVPPSLLKY
PGGTGALNPLLGPQQMAVLNQLSQLNQLSQLNQIGQLQRFLLQQQQQQQQQQQQQQQQQQ
QQQQQQQQKAQSQRNMSMGRHAEQVQTRPIGSSQMMQPPRHLDPVLLKQAAAHKPYLDNY
LAHNAPELQKDSVALGNISNFPLALNPNLNVSLDIGGTGGGGYKEPPQSRMKKLWATDPL
EQNSKPGAMSSGLRLDESSFYDFLSSGPSPLTPPGQSMGSVGDGWPPRANSPPPHGNTVT
WPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVRDTDHLRDRNNGPSSSLNTTM
PSNSAWSSIRASSHIGSLTSTAQSTSARPGESKWSPGSGGGSVSNSSLAHELWKVPLPSK
GLSVAPPSRPPPGLTGQKPGSGSSAWDSSSLRLGGWGANESRFTPGSSWGDGGGGGGGSS
SGRTQWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNAVVCYSSMDEAAKAQKSL
HMCVLGNTTILADFGSEEEISRFFAQGQSLAAPSSGWQTIGSSQSRMDQSHPFPSRSLEP
NQWNGSDLHSSTLWGGPNYSTSLWGAPSGNEGGRISSPSPISSFLPVDHLAGGGDSM
NT seq
5574 nt
NT seq
+upstream
nt +downstream
nt
atggctcccattcgggactccgtcagccactcccctaatcaaacaggtctggagcacccc
ggcctggactctcagtatgagccgtccccctggtcgactggctctccctgcggcggcgac
ggcaacagcaactgggacgcggtcctagtggagggcagcgccgacaagcccagcaacctc
tcctccaccaactcgtccgtctggccctcctcctcctcctcctcctcctcctcgggctgc
ggctcggggtcggaccccgagctggcgtcggaatgcatggacgccgactctagctccccg
ctgggctccgagaggaacctcgccgccgtctccacgacgacggcggccatgatgtcactg
gccaacgcctccgctgcgtcgtcctcctcctccgccgccgccccctcctccgtgagcacc
gccgcggcgagcgcgctggtcaacggcgacggcaacgccaaccgccagacctcgggcggc
gcccacaacggaaacaacaacaacaacccgtgcggcccctcctcccactactccatggcc
ggcgtcggcagcaacaacggcgtcggcggcggccagggcaacaggctcgtcgggagcagc
gtgtggggggcgcagcccgccgggaacccttccgacggcggcggcggcggcggcggcctg
aaccccagcactttgaaccccctcgccaaccacggtgcctggccccgcagcccgaccccg
aacccggcgccgtgccccggccagcggccgccccaggccccgggcgcggcctccaaatca
ggcgccgcgcctccccacgacggatggggcgacatgccagctcaaggagcctgcggcccg
atggacgaggggccgggcgctcgcggtgcggcgacgggcggcggcagtgatggccagcag
tccccccaccctcacactgaatccaacggaccaaataacactatgatgttgaatactact
acgaccacgactactaacgcaacaggaacctctagtctaccaaactctaccggcgacggg
ccctggggctcggccccggggcccgccgggggtccgctcgccaacggccccccgaccctg
gccccccacggagagacggcgcggggtcccggggccttcggtacgccctggggcgccccc
acccacccgggcgacaaaggtcccgccggcccggacactgtgaacccccaacaccaggcc
gggccccccgccgctcacaagagttaccaccacgccggggccccccgctgggagcagggg
cccggcggcagccccgcccccgtcccgagcggcatgccctgggggagcgcttccagcccg
gcgcccggcccggggggacagggcccccggccctggggcggcggcgcctcgtcctcgtcc
tcgtcctcctccacctcctctggctcccacaacaagacgaccaacggggagtggggcgcc
atgccccccgggaacaaccacgccgccgacgccggcgtccgcaaggccagctcctccaac
aacggctggaagagcctggaggacgacgccctgggcgtgggcggcgggggcccccctgcg
gccccggcccctggcgcctggggccgctccggcggcagcgagggcagcggcgagagctcc
gggggccgctccggcagcgacaaggacggccagccccggggccccaaccggcggaggccc
ccccctccggccgccgccccgccggcccccccggcccgtgccgacgtggacccccgggtg
ctgtccaacaccggctggggccagacgcccgtgcgccagaacaccacgtgggacgtcaac
tcccccgccagccacccgccgcccggcccccgaggggaggacaggaagcccggcggcggg
gggtccgggtgggccggggggcagccagtggccccctcccagaccagctccggaggttgg
agggagggacccgggaactcgggcccagacaaggggggcccgggctggggagaacccagg
cccaaccccggctgggacaacaacaccaagggcggagggagcggcggccacggggggcgg
gacgacgcctcgagctacaaagggggcagcggcaacacctggagcaacaaccccagccgg
gacgacaggtccaacacctggaccaacgcgcccaggcagccccggcagcagcaaggctgg
gggggcgggggcggaggcgagggctggggcaacgggggtggaggcgactcctcctcctcc
tcctcttaccggggtgggagcaacaaccactggggagacgcccagaagggaggcggcggc
ggcggcggcggcgggggggcctgggagggcgacagcgaccgctcaggctccggctgctgg
agcgaccctagccgcgccaacgccaacaacggcggcggcggcggcgggaacacgtggacc
gggagcagcgcggccaacacgcaagaccagggcaaccacaaccagggctccaacagctgg
ggagaccccaccggccccaagcccgcccctcagggtaggggccagggctggggggagccg
cagaagcaccaccacgggaaccagagctggggcgaaccgccacccaagacctccaacccc
tccaacgagtggggcaagggccccgagcccgtggccagaggaggccagggccccaccaag
cccacaggctggatgggaggtcccatacccgcgggctgccagagggagaaggaggagccg
gcggcgacctctgggtccggctgggaggagccctccccggagtccatccgacgcagaatg
gagatagacgacggcaccgctgcctggggggagccagggaggaacccaggcaaatacaac
gcaggtggaccttcaaacacgtggaacaagaacagccaatcagagcaagagcccatgtct
catggcccgcccccaggacaccagctgcaccaatcacaggggccgatccatgcccctcag
ccgatgcagactcaagccccggaaaagacctctagtgctggctggggcgagtaccccgcg
cacaaggagccctcctcgtggggggagacccccgccccagcgccctctgtgtccgtggac
aacggcacatcggcctgggggaagcccgtggacagcggcgtcggcaagaacggcggcggc
ggcggcggcggtggcggcggcgcccccaactggggggaggagcacgcgcgggaccagccc
agcggcagagagcccggcccaggctgggggggcgggggccagcagcagaagacaggcgtg
aagcccatggagacgtggggaggagacgaccagtcctccagctgggaccaggaggaggag
gtggagataggcatgtggagcaacacgggcggccagcaggacagccgctcccacgaccac
aacacctggaactacaagcagaagggccccaacaagatgcacaagtcggtgagcaagcag
gacgagccgtggatgaaacccttcaccaaccagttcaacaacatgaactttcccagagac
tctcctgacgactccatgaagccgggcggtgggggcatggggcaggacaagcgcatggac
atgggccccatgggcgactacaacggcatgatgggcaagggccacggcccgcgccaccag
ctccacaaggatccccccatcgaccggggcccgtactacgacaagaatgttaaccccatg
ctaggcggcagcagcctagcccagggccgcgggccccagctccctccccaaaccaacctc
cgtaaccaagtgcctccacccatcctcccctctcaggttccaccctccctgttgaagtac
ccaggggggaccggagccctgaaccccctgctaggaccccagcagatggccgtgctcaac
cagctgtcccagctcaaccagctctcccagctcaaccagatcggccagttgcagcgcttc
ctcctgcagcagcagcagcaacaacaacaacaacagcagcagcagcaacaacagcagcaa
cagcaacagcagcagcagcagcagaaagctcagagccagaggaatatgtccatgggacgg
catgctgaacaggtacagactcgtccgattggttcatcccagatgatgcagcccccccgc
cacctggaccctgttctgctcaaacaggccgcggcccacaagccctacctggacaactac
ctggcccacaacgccccggagctgcagaaggactcggtcgctctgggcaacataagcaac
ttccctttagccttgaaccccaacctgaatgtatcccttgacattggcggcactggagga
gggggctacaaggagcccccccagtctaggatgaagaaactctgggccaccgaccctctg
gagcagaacagcaaacctggtgctatgtcgtctgggctgcgtctggatgaatcatccttc
tacgatttcctgtcttctggcccctccccactgactcctcccggccaatcaatgggctcg
gtgggcgacggctggccaccccgtgccaattctccccctccccacggaaacacggtcacc
tggcccccagagttccggcccggggagccctggaaaggttaccccaacatcgaccccgag
accgacccctacgtgacccccggtagtgtcatcaacaacctctccatcaacaccgtccgt
gacacagaccacctcagggacaggaacaacgggccatcctcatcactgaacaccacgatg
ccttctaacagtgcctggtcctccattcgtgcctccagccatatcggttccctcaccagt
acagcacaaagcacttcagccagaccaggcgagtccaagtggtccccgggcagcggcgga
ggctctgtgtccaactcttccctggcccacgagctgtggaaggtccctctgccctccaag
ggcctgtcggtggcgccgccctcccggcccccgcccggcctcacggggcagaagcccggc
tccggctcctcggcctgggacagctcgtccctgaggctcgggggctggggcgccaacgag
tccaggttcacccccggttccagctggggtgatggcggcggcggcggcggcggcagcagc
tcaggaagaactcaatggcttgtcctcaagaatctcactcctcagatcgacggttccacc
ctaaggaccctgtgcatgcaacacggccccctgatcacattccacctcaacctgccccac
ggcaacgctgtggtctgctacagctccatggacgaggccgccaaggcgcagaagagcctg
cacatgtgtgttctggggaacactacgattctggccgacttcggcagtgaggaggaaatc
agtcgtttctttgcacaagggcagtctttggccgccccctcctcgggctggcagaccatc
ggctcgtctcagagcagaatggatcagtcccaccccttccccagccgctctctggagccc
aaccaatggaatggcagtgacctccacagctccaccctctggggcgggcccaactattcc
actagcctatggggcgctccgagtggcaacgagggcgggaggataagcagcccttcacca
atcagctccttcctcccggtggatcacctggcagggggcggggactccatgtga
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