Gadus morhua (Atlantic cod): 115560450
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Entry
115560450 CDS
T10832
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
115560450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115560450
Membrane trafficking [BR:
gmh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115560450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
TPR_VPS8_2
zf_RING_Vps8_fungal
zf-RING_Vps41
Beta-prop_WDR5
Beta-prop_THOC3
zf-RING_UBOX
Beta-prop_EML_2
Beta-prop_WDR3_1st
zf-RING_5
ANAPC4_WD40
zf-RING_11
WD40_Prp19
zf-RING_2
Beta-prop_HPS5
zf-C3H2C3
WDR55
EIF3I
Motif
Other DBs
NCBI-GeneID:
115560450
NCBI-ProteinID:
XP_030235737
Ensembl:
ENSGMOG00000016562
LinkDB
All DBs
Position
15:complement(8608218..8653115)
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AA seq
1405 aa
AA seq
DB search
MSESPDCRSLLSASSQLNLMEIDAIDDKEFDIPQVDTPPTLESILNEPETEEETFLWEDT
SLLNTDPVDSHSCETSSLASSDSGDPAHLKRRKKTVEMNASVHGSVLRHSLLKGISAQIV
SAADKVDAGLPTAITVSGVIAVGTSHGLALVFDVNQALRLCLGTTATGAEFGAVSALSIN
HDCSRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAICNDSGGSV
FELAFRRVMGMRSCDSRCLFSGSKGEVCCIEPLHTPPDLRDHPITPYSLLAMGSLTKILV
IGLKPSLKVWMTFPYNKSDPSSVPQLAWQFVPAQKTYNPVLAFCRGDTVHFLLVKKEEAG
SIHVVKQRQLHLNCDLISLSWISSRTLVLVNSQEQLQVVDRPSQEVLDQLDLEQVQLVYN
SRHFKSLATGGNVSEALALVGEKACYESVCSYAGQILYLGTKSAHIMTLRNWRERVDFLL
RQERFGEALALAWSFHEGTAKAVVGLYGDPGKRRGVVADKMVEILILFVERSLKRCPDQG
KIQVLEQHFQEVVPVVVDYCLLLQRSDLLFEQLYSRLVENVVSRGMFLEALESYIISQRL
AHLTTPIMKDLLAHYHGNGLMDRLERLIVHLDVTSLDMQQVVQMCWENHLYDAMIYVFNR
GMNDYITPLEKLFAEIGPHLREGRQLTNEQVVIGNKLLVYISCSLAGRAYPLGDIPEDLV
PQVKNKVFDFLIRLHSETSEEEEVFPFIRTLLHFDTREFLNVLALTFEDFRNDKQALEYQ
QRIVDILLKVMVDNPDFTPSQVGGLFTFLARQMAKPDNTLFVNRKLFDQVLEFLCCPDDD
SRHTERQQVLLELLHVGGVVQFDEGSLLALAEKAEFYQICEFLYEKQHLYEKIIDCYLRD
NLRKVEVFSYIHNLLSMPGYSPAEKQNVWDKSLQHIQELVALDPSRSADLVTCHFSEHVQ
PILSQLEDDKLRFQFLTSLLEPREGRPADSTVTLDPDLHEQQVGLLCRFDPPGLQAFLET
SQLYPLEAAIKMTEQYGHSEATSYLLEKKGDAHGAFTVLLTKLKRILESITRDGGVAEGD
GGGAKDGSVPLEGLESSLDDIIALCQRNSQNLNQQQREVLWFPLLEAMMAPQKLLRGPNT
NHTSEALKELTMKVLNAMSSFIPLPDIIQRILQDPVYGKGKLSEIQGLILGMLDTFNYEQ
TLLETTTSLLNHDLHWSLAHLRASVTRGLVPRQDTCNICLLQYRRRHDPPEEIVIFSCGH
LYHCQCLQAKDCGSGSGSERPQQWSCFKCSSNQGGRGGAMADQRRARSTSLAQTNVTSSL
REPGLEAHGKKLFVEATLDPQQAQSWDHLRCLYHGPSRLAILSELTHCHGNEKAGLLHPA
PQGTGSVFHSEDFKLKLCPPPAVEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtctcccgactgtcgcagcctgctgtcggcgtcctcgcagctcaacctcatg
gagatagacgcaatcgacgataaggagtttgacattccccaagttgacacccctcctaca
ctggaaagcatcctaaatgagcctgagaccgaggaggagacgttcctgtgggaggacacc
agcctcctgaacacggaccccgtggacagccactcctgtgagacgtcgtccctggccagc
tccgacagcggggacccggcccacctcaaacggaggaagaagaccgtggagatgaacgcc
agcgtgcacggatctgttcttagacacagtctgctgaaggggatctctgcccagatcgtc
tctgctgctgataaagtggatgcaggactccctacagccataacggtgtctggagtcatc
gcggtggggacctcccatgggctggccctggtgtttgatgtcaatcaggcgctgcggctg
tgcctgggaaccacggcaacgggggcggagtttggcgccgtgtccgccctcagtatcaac
catgactgctcgcggttgctgtgtggttttgccaaagggcagatcaccatgtgggatctg
gccaatgggaagctgctgaggaccatcacagacgcacacccccctgggaccgcgatactg
catgtcaagtttacagacgacccgacactggccatctgcaacgacagcggaggatcagtg
tttgagttggccttcaggagggtgatgggcatgcggtcgtgcgactcgcgctgtctcttc
agcggctctaagggggaggtgtgctgcatcgagccactgcacacccccccggacctgagg
gaccaccccatcacaccctactccctgctggccatgggctccctcaccaagattcttgtg
atcggactcaagccctccctcaaagtatggatgaccttcccctacaacaagtctgacccc
tccagtgtcccccagctggcctggcagtttgttcccgcccagaagacctacaaccccgtc
ctggccttctgcaggggggacaccgtccacttcctgctggtgaagaaggaggaggcgggc
tccatccacgtggtcaagcagaggcagctgcacctcaactgtgacctcatcagcctgagc
tggatcagcagccggaccctggtcttggtgaacagccaggagcagctgcaggtggtggac
cggccaagccaggaggtcctggaccagctggacctggagcaggtgcagctggtctacaac
agccggcacttcaagtctctggccaccgggggcaacgtctcagaggccctggcgttggta
ggagagaaggcctgctatgagtctgtctgcagctacgccgggcagatcctgtatctgggc
accaagtcggctcacatcatgactctgaggaactggagggagcgtgtggacttcctgttg
aggcaggagcggtttggagaggcactagctctggcctggtccttccatgagggcaccgct
aaggccgtggtcggtctgtacggagatccagggaagaggaggggagtggtagcagacaag
atggtggagatcctcatcctgttcgtggagcggtctctgaagcggtgtccggaccagggg
aagatccaggtcctagagcagcacttccaggaggtggttcctgtagtggtggattactgt
ctgttgcttcagagaagcgacctgctgttcgagcagctgtactcgcggctggtggagaac
gtggtttcccgcgggatgttcctggaggcgctggagagctacatcatcagccagcgcctg
gcccacctgaccacgcccatcatgaaggacctgctggcccattaccacggcaacggcctg
atggacaggctggagcggctcatcgtacacctggacgtcaccagcctcgacatgcagcag
gtggtccagatgtgctgggagaatcatctgtacgatgcgatgatctacgtgttcaaccgc
gggatgaacgactacatcactcctctggagaaactttttgctgaaattggaccccatctc
cgagaggggagacagctgactaatgaacaggtggtgatcgggaacaagctgctggtttat
ataagctgcagcctggcgggccgggcctaccccctgggggacatccctgaagacctggtg
ccccaggtcaagaacaaggtgtttgacttcctgatccgtctgcactcggagacctctgag
gaagaggaggtgttccccttcatcaggactctgctccactttgacaccagagagttcctc
aatgttctggcgctgacctttgaggacttcaggaatgacaagcaggccttggagtaccag
cagaggatagtggacatcttgctgaaggtgatggtggacaaccctgacttcacaccctcc
caggtgggcgggctcttcaccttcctggcccgccagatggccaagcccgacaacacgctg
tttgtcaacaggaagctgtttgaccaggtcctggagttcctgtgttgcccggacgatgac
tcgcgacacaccgagcggcagcaggtcttgttggagcttctgcacgttgggggtgtggtc
cagtttgacgaagggagcctattggccctggcggagaaggcagagttctaccagatctgt
gagttcctgtatgagaagcaacatctgtacgagaaaatcatcgactgttacctgagggac
aaccttagaaaggtggaggtgttcagctacatccacaacctgctctcgatgccgggttac
agccctgcagagaaacagaacgtctgggacaaatcactacagcacatacaggaactggtg
gcccttgaccccagcaggtcagctgacctggtcacgtgtcacttctcggaacacgtgcaa
ccaatcctctctcagctggaggatgataagttacgttttcagttcctcacgagcctgctg
gagcccagagagggccggcctgccgacagcacggtgacccttgaccccgacctccatgag
cagcaggtgggcttgttgtgtcgcttcgacccccccgggctccaggccttcctggagacc
tcccagctctaccccctggaggcagccatcaagatgacagagcagtacggtcacagtgag
gccacctcctacctgctggagaagaagggcgacgcccacggggccttcaccgtgctgctc
accaagttgaagagaatcctggagtccatcaccagggatgggggcgtggccgagggagac
ggaggcggggccaaggacggcagcgtgccattggagggcctggagagctctctggatgac
atcatcgccctgtgccaacggaactcccagaacctgaaccagcagcagagagaggtgttg
tggtttcctctgctggaggccatgatggctcctcagaagctcctgagaggacccaacact
aaccatacttctgaagcgctgaaggagctgaccatgaaggtcctgaacgccatgagcagc
ttcatcccgctgcccgacatcatccaaaggatcctgcaggacccagtgtacggtaaaggg
aagctgtcagagatccagggtctgatcctggggatgctggacaccttcaactatgagcag
accctccttgagaccaccaccagcctgctgaaccacgacctccactggtccctggcccac
ctgcgggccagcgtgacgcgggggctggtgccgcggcaggacacctgcaacatctgcctg
ctgcagtacaggaggcgccacgacccccccgaggagatcgtcatcttcagctgtggccac
ctgtaccactgccagtgcctgcaggccaaagactgtgggagtggctccggctcggagcga
ccgcagcagtggagctgcttcaagtgctcgtccaatcagggaggaaggggcggagccatg
gcagaccagaggcgggcccggagcacctctctagcccagacgaacgtgacctcatcgctc
cgagagcccggcctggaggctcatgggaaaaagctgttcgtggaggcgacccttgacccc
cagcaggcccagtcctgggaccacctgcggtgtttgtaccacgggccgtcgcggctggcg
atcctctcggagctcacgcattgccatggcaacgagaaggcggggcttctgcatcctgcc
ccccagggcacaggaagtgtgttccacagcgaggacttcaagctgaagctgtgccccccg
ccggcggtggaggagtag
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integrated database retrieval system
