Gadus morhua (Atlantic cod): 115560649
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Entry
115560649 CDS
T10832
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115560649 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmh03041
]
115560649 (prpf8)
Spliceosome [BR:
gmh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115560649 (prpf8)
Complex C
U5 SnRNP specific factors
115560649 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
115560649
NCBI-ProteinID:
XP_030235910
Ensembl:
ENSGMOG00000002028
LinkDB
All DBs
Position
16:complement(16888111..16905507)
Genome browser
AA seq
2338 aa
AA seq
DB search
MAASFAYRGVPGGMPPGVPPPASIPDFMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDLEEDSSVAEWFYEHQPLKDATKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKDTPLYTDHTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKQRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGIQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWEMTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
ATESAHPIRLYCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIALDLAYNLHSAYGNWFPGGKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDVYG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtctttcgcttacagaggggtccccggaggcatgcctccaggcgtcccccct
ccagcctccatccccgacttcatgtctgaggaaaaacttcaagaaaaagcgagaaaatgg
cagcagttgcaggccaagcggtactcagagaaaaggaagtttggatttgtggatgcccag
aaggaggacatgccacccgagcatgtccgcaaaatcatcagggaccatggtgacatgacc
aacaggaagttccgccacgacaagagggtctaccttggggcgttgaagtatatgccccat
gccgtgctgaagctgctggagaacatgcccatgccctgggaacagatccgagatgtgcca
gtgctttaccacatcactggagccatctccttcgtcaatgagatcccctgggtgattgag
ccggtctacatcgcacaatggggagccatgtggatcatgatgcgtcgtgagaagcgtgac
cgtcggcacttcaagcgcatgcgtttcccgccgtttgatgacgaggagccgccgctggac
tacgcagacaacatcctggatgtggagccgctggaggccatccagatggagctggacctg
gaagaggactcctccgtcgctgaatggttctacgagcaccagcccctcaaggacgccaca
aagtttgtgaacggcaccacctaccgtcgctggcaattcacgctccctatgatgtccacc
ctctaccgcctggctaaccagctgctcacagacctggtggattacaactacttctatctg
tttgacctcaaggccttcttcacttccaaggctctcaacatggccatccccggagggccc
aagtttgagccgctggtcagggacattaacctccaggatgaggactggaatgagttcaat
gacatcaacaagatcatcatcagacagccaatcaggacagagtacaaaatcgccttcccc
tacctgtacaacaacctcccacatcatgtccacctcacctggtaccacactccaaatgtg
gtgttcatcaagacagaggaccctgatctgccagccttctactttgatcccctgatcaac
cccatctcccacaggcactctgtcaagagtcaagagcctctgcctgatgacgatgaggag
tttgagctgcccgagtacgtggagcccttcctcaaggacactcctctctacacggaccac
accgccaacggcatcgctctgctctgggcgccacgcccctttaacctgcgctctgggcgg
accaggcgagcaattgacatccctctcatcaagaactggtatcgtgagcactgccctgcc
ggccagcctgtgaaagtgcgcgtgtcctaccagaaactgctgaagtactacgtgctcaac
gctctcaaacagaggccaccaaaggcccagaagaagaggtacctgttccgttccttcaag
gccaccaagttcttccagtccaccaagctggattgggtggaggtggggttgcaggtctgc
agacagggctacaacatgctcaatctgctgatccatcgtaagaacctcaactacctgcat
ctggactacaacttcaacctcaagcctgtcaagacgctcaccacaaaggagcgtaagaag
tccaggttcggtaacgctttccatctgtgcagagaggtgctgcgtctcagcaaactggtt
gttgacagccatgttcagtacagactgggaaacgttgacgcattccagctgtccgacggg
atccagtacatctttgcccacgtgggccagctgacgggcatgtaccgttacaagtacaag
ctgatgagacagatccgcatgtgcaaggacctcaagcacctcatctactaccgcttcaac
accggaccagtgggtaaaggtccaggctgtggcttctgggcccctggctggagagtgtgg
ctcttcttcatgaggggcatcacccctctgctggagaggtggctgggcaacctgctggcc
aggcagtttgaagggcgtcactccaagggcgtggccaagacggtgaccaagcagcgtgtg
gagtcccactttgacctggagctgcgtgccgccgtcatgcacgacatcctggacatgatg
cccgagggcatcaagcagaacaaggccaggaccatcctgcagcacctcagcgagtcctgg
aggtgctggaaggccaacatcccctggaaggtgcccggcctgcccacccccatcgagaac
atgatcctccgctacgtcaaagccaaggctgactggtggaccaacacggcccactacaac
agggagcgcatccgccgcggtgccactgtggacaagacggtgtgcaagaagaacctgggc
aggctgacccggctctacctcaaggcggagcaggagaggcagcacaactacctgaaggat
ggcccctacatcactgcagaggaggccgtggccatctacaccaccacggtgcattggctg
gagagcaggcgcttctcccccatccccttccccccgctgtcctacaaacacgacaccaag
ctgctcatcctggccctggagcggctcaaggaggcctacagtgtcaagtctcgtctgaac
cagtcccagagggaggagctgggtctcatcgagcaggcctacgacaacccccacgaagcc
ctgtccaggatcaaacgtcacctgctcacccagcgagccttcaaggaggttggcatcgaa
ttcatggacctgtacagccacctggtgccggtgtacgacgtggagcccctggagaagatc
acagacgcctacctggaccagtacctctggtacgaggcggacaagaggcggctgttcccg
ccatggatcaagccggccgacaccgagcccccaccgctgctggtgtacaagtggtgccaa
ggtatcaacaacctgcaggacgtgtgggagatgacggagggcgagtgtaacgtcatgctg
gagtctcgctacgagaagatgtacgagaagatcgatctgacgctgctcaacaggctgctg
cgtctcatcgtggaccacaacattgctgactacatgacagccaagaacaacgtggtcatc
aactacaaggacatgaatcacaccaactcgtacggcatcatccgagggctgcagtttgcc
tcgttcatcgtgcagtactacggcctggtcatggacctcctggtgctgggtctgcaccgg
gccagcgagatggccggcccgccccagatgcccaacgacttcctcagcttccaggacacg
gccaccgagagcgcccaccccatccgcctctactgccgctacatcgaccgcatacacatc
ttcttcaggtttacagcggacgaggccagagatctgatccagaggtacctgacggagcat
ccggaccccaacaacgagaacatcgtgggctacaacaacaagaagtgctggccccgcgac
gctcgcatgaggctgatgaagcacgacgtcaacctgggccgcgctgtgttctgggacatc
aagaaccgcctgccccgctcggtcaccacggtgcagtgggagaacagctttgtgtccgtg
tacagcaaggacaaccccaacctgctcttcaacatgtgtggcttcgagtgccgcatcctg
cccaagtgccgcaccagctacgaggagttcacacacaaagacggagtctggaatctgcag
aatgaggtgaccaaagagagaacagcacagtgtttcctgcgcgtggacgatgagtccatg
cagcgcttccacaacagagtccgccagatcctcatggcctctgggtccaccacattcacc
aagattgtgaacaagtggaacacggctctgatcggtctgatgacgtacttccgcgaggcg
gtggtcaacacccaggagcttctggacctgctggtcaagtgcgaaaacaagattcagacg
cgtatcaagattggcctcaactccaagatgcccagtcgtttcccccctgtggtcttctac
acccccaaagagctgggcggcctgggcatgttgtccatgggccacgtgctcatccctcag
tcagatctgcggtggtccaagcagacagacgtgggcatcactcacttccgttctggaatg
agccacgaggaagaccaactgatccctaacttgtaccgctacatccagccctgggagagc
gagttcatcgactcccagagagtgtgggcagagtacgccctcaagagacaggaggccatc
gcccagaacaggcgtctgaccctggaggacttggaggactcctgggacaggggcatcccc
cgcatcaacactctgttccagaaggacagacacacgctggcctatgacaagggctggagg
gtcaggaccgacttcaaacagtatcaggtgctgaagcagaaccccttctggtggacccat
cagaggcacgacggcaagctgtggaatttgaacaactaccgtaccgacatgatccaggct
ctgggcggcgtggagggcatcctggagcacaccctgttcaaaggcacctacttccccacc
tgggagggtctcttctgggagaaggccagtggttttgaggagtccatgaaatggaagaag
ctgaccaacgcccagagatctggtctcaaccagatccccaaccgtcgcttcacactctgg
tggtcgcccaccatcaacagagccaacgtctacgtgggcttccaggtgcagcttgacctg
acgggcatcttcatgcatggcaagatccccacgctgaagatctccctcattcagatcttc
agggctcacttgtggcagaagatccacgagagcgtggtgatggatctctgccaggtgttt
gaccaggagctggacgctctggagatcgagacggtgcagaaggaaaccatccatcccagg
aagtcctacaagatgaactcctcctgtgcagacatcctcctcttcgcctcctacaagtgg
aacgtctccaggccctcactgctcgccgactcaaaggacgtgatggacagcaccaccact
cagaagtactggatcgacattcagctgcgctggggagactacgactcccacgacattgag
cgctacgccagggccaagttcctggactacaccaccgacaacatgagtatctacccctcc
cccacaggggtgctcatcgccctcgacctggcctacaacctccacagcgcgtacggtaac
tggttccccggaggcaagcctctgatccagcaggccatggccaagatcatgaaggccaac
cccgccctgtatgtgctgagggagcgcatccgcaaaggtctgcagctgtactcctcagag
cccaccgagccctacctctcctcgcagaactacggagagctcttctccaaccagatcatc
tggttcgtagacgacaccaacgtctaccgcgtcaccatccacaagacctttgagggtaac
ttgaccacaaagcccatcaatggagccatcttcatcttcaaccccaggactggccagctc
ttcctcaagatcatccacacgtctgtgtgggccggccagaaacgtcttggacagctggct
aaatggaagactgctgaggaagtggctgccctgattcgatccctcccagtggaggagcag
cccaagcagatcatcgtgaccaggaagggcatgttggaccctcttgaggttcatttgctt
gatttccccaacatcgtcatcaaaggctccgagctccagctgcccttccaagcctgtctc
aaggtggagaagttcggcgatctgatcctgaaggccaccgagccccagatggttctgttc
aacctctacgacgactggctgaagaccatctcttcctacacagccttctctcgtctcatc
ctgatcctgagggcgctccacgtcaacaacgacagggccaaggtgatcctgaaaccagac
aagacgaccatcacggagccccaccacatctggccaaccctcacggacgaggaatggatc
aaggtggaggtgcagctcaaagacctgatcctggctgactacggaaagaagaacaacgtg
aacgtggcctccctcacccagtctgagatcagagacatcatcctgggtatggagatatcc
gctccctcccagcaacgccagcagatcgctgagatcgagaagcagaccaaggagcagtcc
cagctcaccgccacccagacccgcaccgtcaacaagcacggcgacgagatcatcacctcc
accacctccaactacgagacgcagaccttctcctccaagaccgaatggagggtcagggct
atatctgctgccaacctccatctgaggacaaaccacatctacgtttcttctgacgacatc
aaggagacgggctacacctacatcctgcccaagaacgtcctgaagaagttcatctgcatc
tctgacctgcgagcacagatcgccggttacctctatggcaccagtccccccgacaacccc
caggtgaaggagatccgctgcatcgtaatggtgccccagtggggaactcaccagacggtc
cacctgcccaaccagctcccaggacacgagtacctcaaggagatggagcctcttggctgg
atccacacgcagcccaacgagtctcctcagctgtccccccaggacgtcaccacccacgcc
aaggtcatggctgacaacccttcatgggacggagagaaaaccatcatcatcacctgcagc
ttcactcctggctcgtgcacgctgaccgcctacaagctgacgcccagcggatacgagtgg
ggtcgacagaacacggacaagggcaacaaccccaagggttacctgccgtcccactacgag
agggtccagatgctgctctctgaccgcttcctgggcttcttcatggttcccggccaggtc
tcatggaattacaacttcatgggtgtccgccacgaccccaacatgaagtacgacctgcag
ctgtccaaccccaaggagttctaccacgaggtgcacaggccctctcacttcctcaacttc
gcctcgctgcaggagggcgagatctacaacgcggaccgcgaggatgtgtacggctga
DBGET
integrated database retrieval system
