Gadus morhua (Atlantic cod): 115560701
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Entry
115560701 CDS
T10832
Name
(RefSeq) MHC class II regulatory factor RFX1-like isoform X1
KO
K09173
regulatory factor X 1/2/3
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmh03000
]
115560701
Transcription factors [BR:
gmh03000
]
Eukaryotic type
Other basic domains
RF-X
115560701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX1_trans_act
RFX_DNA_binding
Motif
Other DBs
NCBI-GeneID:
115560701
NCBI-ProteinID:
XP_030236078
Ensembl:
ENSGMOG00000008963
LinkDB
All DBs
Position
2:13556031..13581499
Genome browser
AA seq
922 aa
AA seq
DB search
MATSGYVGETQPASLPQGGPGVSMSSVEVATSTTTTTQYLAEIQTSPTASTPGGTGASGE
AQSPTIDGQKPAVQAPQTAVVAQTQYVTAEIQGSPTQTGHAQSTPQYIVVTVTEGSLHSS
DSVSDSSPPPVVVQTGVPTQVVQQVQTAQQRSVVQATSQIAKAEPGTQLTVTSLQPVHIS
QEVQQQLTQVQHVYTNQVQYVEGGDTNYTTSTIFSYADAPLYTQTTASQYYEASTTQAST
PGTPLTVSVTAGSAGGVSMFVAQPASVAAGAAEAVAGSVAVVSGANGGADGAGTNGGAAT
GSYVIQGGYMLSGSSNSSGGSAGGAGGGGGGGGGGGGGGGGGGSGGNGQSYSLAARASPA
TVSITEGEESNLPSADKKVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASF
GKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSSLIRLMEDQQHLAMRQQPFSQKQRL
KPVQKIEGMTNGTGSGTGQQQQPHGAGLSDISAQVQQYQQFLDASRALPEFPDIDLQGKA
LPEGVELEHIKSFQLLYREHCEAILDVIVNLQFTLVETLWKTFWRFSQNQPADSAALAVH
DESEKRLPKSCLVVLCKYEPVLRWSRDCDNSLYQALVEILIPDVLRPIPSALTQAIRNFA
KSLESWLTNAMMNIPEEMVRIKVTSASAFAQTLRRYTSLNHLAQAARAVLQNTAQINQML
SDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKLTLQQQNSLEQWAAWLDGVVSQVLKP
YQHSAAFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVA
QAKGETPIAVMGEFASLGRMLNPLDPDKEEEEEEEEEESDDEGQELSLQSDGAGLGEESL
EPPAKLARTDQRVLFPPDSADN
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggccacctcaggctatgtgggagagacacagccggcgagtctaccccaagggggccct
ggtgtttccatgtcgtcggtggaggtggccacctccaccaccaccactactcagtacctg
gctgagatccagacgtcccccactgccagcacgccagggggtacaggggcgtccggcgag
gcccagagccccaccatcgatgggcagaagccggcagtccaggccccccaaacggcggtt
gtggcccagacccagtatgtgaccgcagaaatccagggctcccccacacagacgggccac
gctcaaagcacgccacagtacattgtggtcaccgtcactgagggatccctccactccagc
gacagcgtttcagactccagcccccctccagttgtggtccaaacaggcgttcccacacag
gtggtccaacaggtgcagactgctcagcagcggtccgttgtgcaggctacctctcagata
gcaaaggctgaaccgggcacccagctcacggtcacaagtctacagcctgtccatatcagc
caagaggtgcagcagcaactgacccaggtgcaacacgtgtacaccaaccaggttcagtat
gtggaaggaggagacacaaactacaccaccagtactatcttctcctatgccgacgcgccc
ctctacacccagacgacggcgtcccagtactacgaggccagcaccacccaggcctccacc
cctggcacccccctcaccgtgtcggtcacggccggttccgcggggggcgtgtccatgttc
gtggcccagccagccagcgtggcggcgggggccgcggaggccgtggcggggtccgttgcg
gtggtgtccggggccaacggtggggcagacggggccggcaccaacggcggcgcggccact
gggagctacgtgatccaggggggctacatgctgagcgggagcagcaacagcagtggtggc
agcgcgggaggggctggaggtggaggtggaggtggaggtggaggtggaggaggaggagga
ggaggagggtcaggtggaaacgggcagagctactcgctcgcagcccgagcctccccggcc
accgtgagtattaccgagggggaggagagtaacttgccatcggcagacaagaaggtacag
tggttgctggacaactacgagacagctgaaggcgttagtctgccccgctccacgctctac
tgccactacctgctgcactgccaggagcagaagctggagcccgtcaacgccgcctccttc
ggcaagctaatccgctctgtcttcatggggctgcgcacgcgccgccttggcacacggggt
aactcgaagtaccactattacggcctgaggatcaaggctagctcctctctcattcggctg
atggaggaccaacagcacctggccatgaggcagcagcctttctcccagaagcagaggttg
aaaccggtgcagaagatagagggaatgaccaatggcacaggatcagggacggggcaacag
cagcagccacacggggccgggctgtctgacatcagcgcccaggttcagcagtaccaacag
ttcctcgacgcatccagagccctgccagagtttccggacatcgacctgcaagggaaggct
ctgcccgagggcgtagagctggagcacatcaagagcttccagctgctctacagagaacac
tgtgaggcaatcctggatgtgatcgtcaacctgcagttcacgttggttgagacactttgg
aagaccttctggaggttcagccagaatcagcctgccgactctgctgcactggccgtccac
gacgagtctgagaagcgtctgcccaagtcctgtctggtggtcctctgtaagtacgagccg
gtgctgcggtggagccgagactgtgacaacagcctgtaccaggcgctggtggagatcctc
atccctgacgtcctcaggcccatacccagtgccttaacacaagccatccgtaacttcgcc
aagagtctggagagctggctgaccaacgccatgatgaacatccctgaagaaatggtccgc
atcaaggtgacgtccgccagtgcctttgcccagacgctgcgtcgctacaccagcctgaac
cacctggcccaggcagcccgcgctgtgctgcagaacaccgctcagatcaaccagatgctc
tccgacctcaaccgcgtggactttgctaacgtacaggagcaggcgtcctgggtgtgccgc
tgtgaggaccgcgtggtgcagcggctggagcaggacttcaagctcacgctgcagcagcag
aactccctggagcagtgggccgcctggctggacggggtggtgtcccaggtgctaaagccc
taccagcacagcgctgctttccccaaggctgccaagctcttcctgctcaagtggtccttc
tacagctccatggtgatcagggacctgaccctgcgcagtgcggcaagctttggttccttc
catctgatccggctgctgtacgacgaatacatgtactacctgatagagcacagggtagcc
caggctaaaggggagacccccatcgcggtcatgggagaatttgccagtttgggcaggatg
ttaaatccactggacccagacaaagaggaggaagaggaggaggaagaggaggagagcgat
gacgaaggccaggagctttccctccagtcagacggcgccgggctgggggaggaatctctt
gaacccccggccaagctggccagaacggaccagcgggttctcttcccgcccgactctgcg
gacaactga
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