Gadus morhua (Atlantic cod): 115560760
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Entry
115560760 CDS
T10832
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04137
Mitophagy - animal
gmh04140
Autophagy - animal
gmh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115560760
04137 Mitophagy - animal
115560760
04148 Efferocytosis
115560760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmh03000
]
115560760
Transcription factors [BR:
gmh03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
115560760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
TLP-20
GSK-3_bind
Motif
Other DBs
NCBI-GeneID:
115560760
NCBI-ProteinID:
XP_030236148
Ensembl:
ENSGMOG00000003074
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All DBs
Position
16:8703039..8717415
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AA seq
667 aa
AA seq
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MSESVGVKRASSDQRKVRSRDAARCRRSQETEIFYQLANALPLPHKVSAHLDKAAIMRVT
LSFLRMHRLLRAGEMEGAEPKEEAEEDCMDGFYPRALAGFITVLTEEGDMVYVSDSVSKH
IGIAQLELLGQSVYDFVHPCDLEELRDLLTARPGGRKRADSDQWRALNFFLRVKSTLTSR
GRTVNIKSATWKVLHCTGYVGACGSTTLLCEPVPHPSSVEFPLDSSTFITRHSMDLRFTH
CEGRVTELVGYEPDDLIGRSAYEFHHALDSAHVNRSLHTLLSKGQVCTSQYRFLAKRGGF
VWAETQATVLYNSRTSQPEAVVCLNFILSVVEQADVVFSVEQTRYSPPSEPHTGPEVSAT
PKPILTVLGDQEEEEEEEEEEEEECKDDDDDEEVLFLKLKENSELMQLTPQEGDDIMPLP
DFVQLSFVSPCGSTSLPDCPQDLCTPELRQLLAPIFDILTPHPSSSSPSSSSSPLSAAAL
SPEPESRSVERFFAVCQEEGQKPAEDTQEGMEEMDLEMLAPYISMDDDFQLTFLTALPEG
CELTSSSSSSSSSCKLHTATSAATSLRKRTLGLDRTLSSVFEVEDKRQRRDSSSVDQDLL
FTHRLLDCLDDTDQSDLDLEPRPQKSQLLTDRDPVFGGLQGLCDTAALMRDVFSSRPPDR
SPLSPMT
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtccgtcggagttaaacgggccagctcggaccagaggaaggtgcggtcgcgg
gatgcggccaggtgtaggcggagccaggagacggagatcttctaccagctcgccaacgcg
ctgcccctcccacacaaagtctccgcccacctggacaaggccgccatcatgagggtcacg
ctcagcttcctgcgcatgcaccgcctcctcagagcaggggagatggagggggcggagcct
aaggaggaagcggaggaggactgtatggacgggttctacccgagagccctggctggtttc
atcacggtgctgacggaggaaggggacatggtctacgtgtccgacagcgtctccaaacac
atcggcatcgcacagctggagttactgggccagagtgtgtatgactttgtccacccatgt
gacctggaggagctcagagacctgctgacagcgagaccaggtgggcggaagagggcggac
tcagaccagtggcgggcgttgaacttcttcctgcgtgtgaagagcacactgaccagcagg
gggcgcaccgtcaacatcaagtcagctacctggaaggtgctccactgtacgggctacgtg
ggtgcgtgtggctccaccaccctgctgtgtgagcccgtccctcacccctccagcgtggag
ttccccctggacagcagcaccttcatcacccgccactccatggacctgcgcttcacacac
tgcgagggccgggtgacagagctggtcggatatgagccggacgatctgattggtcgctca
gcctacgagttccatcacgccttggactctgctcacgtcaacaggagcctccacaccttg
ctgtcaaagggccaggtgtgcactagtcagtaccgcttcctggccaagagggggggcttt
gtgtgggcagaaacccaggccacggtgctctacaacagcaggacgtcccagcccgaggcc
gtcgtctgcctcaacttcatcctcagtgtggtggagcaggcagacgtggtgttctctgtg
gagcagacccgctacagcccgccatctgagccccacacggggccggaggtctctgccacc
cccaagcccatcctcaccgtgctgggggaccaagaggaagaggaggaggaggaggaagag
gaggaggaggagtgcaaggatgacgatgatgatgaggaggttctcttcctcaagctgaag
gagaactctgagctcatgcagctcactcctcaggaaggagacgacatcatgccactccca
gactttgtgcagctgtcgttcgtcagcccctgtgggtcgacctcgctgcccgactgcccc
caggacctgtgtaccccagagctgcggcagctgctcgcgcccatcttcgacatcctgacc
ccgcacccttcatcatcatcaccatcatcatcttcctcaccactgtctgcagcggccctc
tccccagagccagagagtcggtcagtggagaggttctttgcagtttgtcaggaagaggga
cagaaaccagcagaagacacacaagagggcatggaggagatggacctggagatgttggct
ccttacatctccatggacgacgacttccagctcacattcctcacggccttgccggagggc
tgtgagctcacatcctcgtcttcctcctcctcttcatcatgcaaactgcacaccgccaca
tctgctgccaccagcctcaggaaacggaccctcggtcttgacaggaccctctcgtccgtg
tttgaggttgaggacaagcgacagcgacgggactcgtcctctgtggaccaggacctgctc
ttcacacacagactactggactgcctggatgacactgaccaatcagatcttgatctggag
ccccgcccccagaagagtcagttgctgacagacagagatccagtctttggaggcttacag
ggactgtgtgacacagcagctctgatgagggatgtcttttcgtcccgcccacctgaccga
tctcctctctcaccaatgacttga
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