Gadus morhua (Atlantic cod): 115560835
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Entry
115560835 CDS
T10832
Symbol
farsb
Name
(RefSeq) phenylalanine--tRNA ligase beta subunit isoform X1
KO
K01890
phenylalanyl-tRNA synthetase beta chain [EC:
6.1.1.20
]
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
115560835 (farsb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
gmh01007
]
115560835 (farsb)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gmh03016
]
115560835 (farsb)
Enzymes [BR:
gmh01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.20 phenylalanine---tRNA ligase
115560835 (farsb)
Amino acid related enzymes [BR:
gmh01007
]
Aminoacyl-tRNA synthetase
Class II (U)
115560835 (farsb)
Transfer RNA biogenesis [BR:
gmh03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
115560835 (farsb)
Prokaryotic type
115560835 (farsb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_synthFbeta
PhetRS_B1
B5
B3_4
EAD7
Motif
Other DBs
NCBI-GeneID:
115560835
NCBI-ProteinID:
XP_030236288
Ensembl:
ENSGMOG00000013047
LinkDB
All DBs
Position
16:complement(29825368..29860017)
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AA seq
703 aa
AA seq
DB search
MPTVSVKRDLLFQALGKTYTDEEFDELCFEFGLELDEITTEREQISREQGDCKASGASEV
VLYKIDVPANRYDLLCLEGIARGLQVFKDKMEAPRYRRVSPASGEPQRLLVTSETAAVRP
HAVAAVLRDITFTQERYDSFIELQEKLHQNVCRKRTLVAIGTHDLDTVCGPFTYTAKLPA
DIHFRPLNQTQEFTAVELMSLYKTDSHLRHYLHIIEDKPAYPVIYDSNGVVLSMPPIING
DHSKISLKTKNVFVECTATDLTKAKIVLDMMVTMFSEYCAEPFTVEGAEVVSPDGSTYMY
PELAYRTETLSSEFINRKVGINESTERIAGLLTKMCLRSQPTGAGDQIQVEIPPTRSDVI
HACDIMEDAAMAYGFNNIPRTTPGTYTVANQYPLNKLTELLRQDLAAAGFTEALNFALCS
QEDITDKLRKKLFETRAAHIANPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISD
VVLKDETKDVGARNSRRLCAVFYHRSPGFEVIHGLLDRAMQLLEVAPARGTGYHIQAADD
STFFPGRCAEVFVCGVSVGRLGVLHPDVIQRFELTMPCSALEMDLEPFLGCHSEVLLTHD
VPLQEVLHHRFVEVPVPASTRTVFGDLGTAAGLRALNEFLAPRSYIEGFLASSADTEVLG
AIPADCPPPPALCHALRWYRHTRSLGAGCGLPAARRRYVLEAE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgccgactgttagcgtgaaacgggatcttctcttccaagccttggggaaaacgtacacg
gacgaggagtttgatgaactgtgctttgagtttggacttgagttggatgaaataaccaca
gagagagagcagatcagtcgcgagcagggggactgcaaggcatcaggggcctccgaggtg
gtgctgtacaagatcgatgtgccagctaaccgctatgacctgctgtgtctggaaggcatc
gcccggggactgcaggtctttaaggataagatggaggctccgcgctaccgacgtgtgagc
ccagccagtggagagcctcagaggcttcttgtgacttcagagacagctgcggtgcgtccc
cacgctgtggcagcggtgctcagggacatcaccttcacgcaggagcgctacgacagcttc
atcgagcttcaggagaaacttcaccagaacgtctgcaggaaaaggaccttggtggccatc
ggcacccacgacctggacaccgtatgcggccccttcacgtacacggccaagctcccagcc
gacatacacttcaggcccctcaaccagacccaggagttcactgccgtggagctcatgagc
ctgtacaagacggacagccacctgaggcactacctccacatcatcgaggacaagcccgcc
taccccgttatctacgatagcaatggtgtcgtcctctccatgcctcccatcatcaacgga
gaccattccaaaatctccctcaaaacgaaaaacgtctttgttgaatgcacagccacagac
ctgaccaaggctaagatcgtgctggatatgatggtgaccatgttctcggagtactgcgca
gagcccttcacggtggagggggctgaggtcgtgtctcctgatggcagtacctacatgtac
ccggagcttgcttacagaacggagacactgtccagtgaattcatcaaccgcaaggtcggc
atcaacgagtcaacggagcgcatcgccggcctgctcaccaagatgtgtctgcgctcgcag
cccactggcgccggggaccagatccaggtggagatcccgcccacgcgctctgatgtcatc
cacgcctgcgacatcatggaggacgccgccatggcatacggctttaacaacatcccccgc
accactccggggacctacaccgtggccaatcagtaccccctgaacaagctgacggagcta
ttgagacaagacctggcggcggctggattcactgaagccctcaactttgccctgtgttct
caggaggacatcactgacaagctgaggaagaagctctttgagaccagggccgcccacatc
gccaaccccaagacagcagagttccaggtggcacgcaccacgctgctcccaggcctgctg
aagaccatcgcggccaataggaagatgccgctccctctcaaactttttgagatctcagac
gtggtgctgaaggatgagaccaaagacgtgggggccaggaacagccggcggctgtgtgcc
gtgttctaccaccgcagcccgggcttcgaggtgatccacggcctactggaccgcgccatg
cagctcctggaggtagcgccggcccgaggaacggggtaccacatccaggctgctgacgac
tccaccttcttcccgggccgctgcgccgaggtgtttgtgtgcggggtcagcgtgggccgg
ctgggggtcctccaccccgacgtcatccaacgctttgagctcaccatgccctgctccgcc
ctggagatggacctggagcccttcctcggctgccactcagaggtgctgctcacgcacgac
gtccccttgcaggaggtcctccaccaccggttcgtggaggtccccgtccccgcctccacc
cggacggtgttcggggaccttggcaccgccgccgggctgcgggccctcaacgagttcctg
gccccgaggagctacatcgaggggtttctggcgtccagcgccgacacggaggtgcttggg
gctataccggcggactgccccccgcccccggcactctgccatgccctacgctggtaccgc
cacacccgctcactaggggccggctgtggcctgcccgccgcacggcgccgctacgtcctg
gaggcagagtga
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