Gadus morhua (Atlantic cod): 115561297
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Entry
115561297 CDS
T10832
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh03030
DNA replication
gmh03420
Nucleotide excision repair
gmh03430
Mismatch repair
gmh03440
Homologous recombination
gmh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115561297 (rpa1)
03420 Nucleotide excision repair
115561297 (rpa1)
03430 Mismatch repair
115561297 (rpa1)
03440 Homologous recombination
115561297 (rpa1)
03460 Fanconi anemia pathway
115561297 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmh03000
]
115561297 (rpa1)
03032 DNA replication proteins [BR:
gmh03032
]
115561297 (rpa1)
03400 DNA repair and recombination proteins [BR:
gmh03400
]
115561297 (rpa1)
Transcription factors [BR:
gmh03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115561297 (rpa1)
DNA replication proteins [BR:
gmh03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
115561297 (rpa1)
DNA repair and recombination proteins [BR:
gmh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
115561297 (rpa1)
MMR (mismatch excision repair)
115561297 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
115561297 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
IBR
GDH2_N
Motif
Other DBs
NCBI-GeneID:
115561297
NCBI-ProteinID:
XP_030237102
Ensembl:
ENSGMOG00000010382
UniProt:
A0A8C4ZCJ8
LinkDB
All DBs
Position
16:complement(13849729..13887123)
Genome browser
AA seq
599 aa
AA seq
DB search
MKLSEGAIETLTMGGQHPDAMLQLLNIRKMDGTSGPPRFRIMMNDGRHTMSYFMLSTQLN
SLAEQNLLEPNCVCMLKKSVTNVLKDGRRVIIILEIEVITPAKDVPGKLGEPTPFVEGQG
GKAPQAAEPAAPVRPLQPQNGKEPANKGPSREFGKKTPSALPSTPGGSSKVVPIASLNPY
QSKWTIRARVTNRSNIRTWSNSRGEGKLFSMEIVDESGEIRITGFNQEVDKFYNLIEVGK
VYYMSKGTLKIANKQYSSTKNDYEMTLNGESSIIPCDDASDLPVALCSFVAISDLASHEK
DAVLDVIGVCKSVDELTRLTTKASREVSKRTFNLMDQSGCTVSVTLWGEEAENFDGSAQP
IVAIKGAKLSDFGGRSLSASFSSTVMINPDLPEAFKLRGWYDKEGHAVEGQSLTEARGSG
GGTTNWKTLSDVKTEHLGHGDKADYFNSIATIVYLRKENCLYQACPSPDCNKKVVDQQNG
MYRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNEA
AFEEIFQQANFHTFVFRSRVKLETYNDESRIKATVMDVKPVDHKEYSKRLIMNIRKMAV
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctcagagggagccatagagacgctgaccatgggaggccagcacccggacgca
atgcttcagctgctgaacatccgtaagatggacggtaccagcggcccaccccggttcagg
atcatgatgaacgacggccgacacaccatgtcgtacttcatgctgtccactcagctgaac
tcgctggccgaacagaacctgctggaacccaactgtgtctgcatgctgaagaagagtgtg
accaacgtgctgaaggatggaaggcgagtcatcatcatcctggagatcgaggtcatcacg
ccggccaaagacgttcccgggaagctgggcgagcccactcccttcgtggaaggtcagggg
ggtaaagcaccacaggctgccgagcccgccgccccggtccgccccctgcagccccagaac
ggtaaagagccggcaaacaaaggtccaagcagagagttcgggaagaagaccccctctgcc
ctgcccagcaccccggggggctcctccaaagttgtgcccatcgccagcctcaacccctac
cagtccaagtggaccatccgggctcgcgtgaccaaccgcagcaacatccgcacatggagc
aactcccgcggggagggcaagctcttctccatggagatcgtggacgagagtggagaaatc
cgcatcacaggtttcaaccaggaggtggacaagttctacaatctgatcgaggtcggaaag
gtgtactacatgtccaagggcaccctgaagatcgccaacaagcagtactcgtcgacgaag
aacgactacgagatgacactgaacggcgagtcgtccatcatcccctgcgacgacgccagc
gacctgcccgtggccctctgcagctttgtggccatcagcgatctggcgtcgcacgagaag
gacgcggtgctggatgtgatcggggtgtgtaagagcgtggacgagctgacccgcctcacc
accaaggccagccgcgaggtctccaagaggaccttcaacctgatggaccagtccggctgc
accgtgtccgtcaccctgtggggggaggaggcggagaactttgacggctcggcgcagccc
atcgtggccatcaagggggccaagctgtcggactttggcgggcgttccctgtcggcgtcc
ttcagcagcacagtgatgatcaacccggacctcccagaggccttcaagctgcgtggctgg
tacgacaaggagggtcatgccgtggagggccagtccctgacggaggcgcggggtagtggt
ggtggcaccaccaactggaagaccctgagcgacgtgaagacggagcacctggggcatgga
gacaaggcggactatttcaacagcatcgccaccatagtgtacctgcgtaaggagaactgc
ctgtaccaggcctgccccagcccggactgcaacaagaaggtggtggaccagcagaacggc
atgtaccgttgtgagaagtgtgacaaagagttccccaacttcaagtaccggctcatcctg
tctgccaacatcgcggactacggagacaaccaatgggtgacgtgcttccaggagagcgcc
gaggccatcctgggccagaacgcggcttacctggggcagcttaaggactcgaacgaggcg
gcgttcgaggagatcttccagcaggccaacttccacacgttcgtgttccgcagccgagtc
aagctggagacgtacaacgacgagtctcggatcaaggctacggtgatggacgtgaagccg
gtcgaccacaaggagtacagcaagagactgatcatgaacatccgcaaaatggccgtctag
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integrated database retrieval system
