Gadus morhua (Atlantic cod): 115561405
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Entry
115561405 CDS
T10832
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
gmh Gadus morhua (Atlantic cod)
Pathway
gmh04142
Lysosome
gmh04144
Endocytosis
gmh05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115561405
04142 Lysosome
115561405
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
115561405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmh04131
]
115561405
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gmh04147
]
115561405
Membrane trafficking [BR:
gmh04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
115561405
Exosome [BR:
gmh04147
]
Exosomal proteins
Proteins found in most exosomes
115561405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
115561405
NCBI-ProteinID:
XP_030237294
Ensembl:
ENSGMOG00000013903
LinkDB
All DBs
Position
16:32055624..32089283
Genome browser
AA seq
1686 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMESNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPTEGPLQTRLLEMNLVHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELIHVCNENSLFKSLSRYLVRRKDPELWASV
LLETNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDDKMYDAAKLLYNNVSNFGRLASTLVHLGEFQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM
SHPSDAWKEGQFKDIVTKVANVELYYKATQFYLEFKPLCLNDLLIVLSPRLDHTRAVNYF
SKVKQLPLVKPYLRSVQNHNNKSVNEALNNLFITEEDYAALRASIDAYDNFDNISLAQGL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLAWFLE
EDKKECFAACLFTCYDLLRPDVVLETAWRHNLMDFSMPYFIQVMREYLSKVDAIKEKVDQ
LEASESLRKQEEQATEAQPIVYGTPQLMLTSGNNVAAPPQQPYGYGYPAAPGGYSQPAQP
GFSYGM
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactgcctatccgcttccaggagcacctgcagctgcagaaccttggaatc
aacccagccaacatcgggttcagcactctgaccatggagtctgataaattcatttgcatc
agagagaaggtgggcgaacaggcccaagtggttattattgacatggccgaccccaacact
cccatccgcagacccatctctgcagacagcgcgatcatgaatccagccagtaaagtgatc
gccctcaaagacgctgcaaagactctacagatctttaacattgagatgaagagcaagatg
aaggcccacaccatgacggacgacgtgacgttctggaagtggatctccctcaacacggtc
gccctggtcaccgacaatgccgtctaccattggagcatggaaggagactcccagccaatc
aaagtctttgaccgtcactccagcctggccggatgtcagatcattaactaccgcaccgat
gccaaacagaaatggcttctgctgattggtatttcagcacagcaaaaccgtgtggtgggg
gccatgcagctgtactcggtggacaggaaggtgtcccagcccatcgaaggccatgccgcg
ggcttcgcccagttcaagatggagagcaacacagaggagtccactctgttctgcttcgcc
gtgcggggacaggctggaggaaagctgcacatcatcgaggtgggcactcccccgacgggc
aaccagccgttcccaaagaaagccgtggacgtgttcttcccaccggaggcccagaacgac
ttccccgtcgccatgcagatcagctccaagcaggacgtggtgttcctcatcaccaagtat
ggctacatccacctgtatgacctggagaccggcacctgcatctacatgaaccgcattagc
ggggagaccatcttcgtgaccgccccccacgagccaaccgcgggcatcatcggggtcaac
aggaaaggacaggtgctgtcggtgtgcgtggaggaggagaacatcatcccctacatcacc
aacgtgctgcagaaccctgacctggcactgcgcatggccgtgcgcaacaacctggccggc
gccgaggagctgttcgcccgcaagttcaacaccctgtttgcagcagggaactactccgag
gcggccaaggtggcagccaacgcacccaagggcatcctccgtaccccggacaccatccgg
cgcttccagagcgtgcccgcccagccgggccagacgtcccccctgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtccctagagctgtgcagaccggtg
ctccagcagggacgcaagcagctgctggagaagtggctcaaggaggacaagctggagtgc
tcagaggaactgggggacctagtgaagtctgtggaccccacgctggccctcagcgtctac
ctgagggccaacgtcccaaacaaggtcatccagtgttttgcagagacgggccagttccag
aagattgtcctctacgctaagaaggtggggtacaccccggactggatcttcctgctcagg
aacgtgatgcgcatcagtccggagcagggcctgcagttctcccagatgctggtccaggac
gaggagccactggctgacatcacacagatcgtggacgtgttcatggagtacaacctgatc
cagcagtgcacctccttcctgctggacgccctgaagaacaaccggcccaccgagggcccg
ctgcagacgcgcctgctggagatgaacctggtgcacgccccacaggttgccgacgctatt
ctgggcaaccagatgttcacccactacgaccgcgcccacgtggcccagctgtgcgagaag
gcgggcctcctgcaaagggcgctggagcactacaccgacctgtacgacatcaagcgggcc
gtggtgcacacgcacctgctcaaccctgagtggctggtgaacttcttcggctccctgtcg
gtggaggactccctggagtgcctgcgggccatgctgtcggccaacatccggcagaacctg
cagatctgcgtccaggtggcctccaagtaccacgagcagctctccacgcagtccctcacc
gagctctttgagtccttcaagagcttcgagggcctcttctatttcctgggctccatcgtg
aacttcagccaggaccccgaggtccacttcaagtacatccaggcggcctgcaagacaggc
cagatcaaggaagtggagcgcatctgccgcgagagcaactgctacgaccccgagcgagtc
aagaacttcctcaaggaggccaagctgacggaccagctgcctctgatcatcgtgtgcgac
cgcttcgacttcgtccacgacctggtgctgtacctctaccgcaacagcctgcagaagtac
attgaaatctatgtgcagaaggtgaaccctagccgcttgcccgtggtcattggggggctg
ctggacgtggactgtgccgaggacgtcatcaagaacctgatcatggtggtgcgggggcag
ttctccaccgacgagctggtggccgaggtggagaagaggaacagactgaagctgctgctg
ccctggctggaggcccgcatccacgagggctgcgaggagccggcgacccacaacgccctg
gccaagatctacatcgacagcaacaacaacccggagcgcttcctgcgggaaaaccccttc
tacgacagccgcgtggtgggcaagtactgcgagaagagggacccccacctggcctgcgtg
gcctacgagaggggccagtgcgaccaggagctcatccacgtctgcaacgagaactctctg
ttcaagagtctgtctcgctacctagtgcgtcgcaaagaccccgagctgtgggccagcgtg
ctgctggagaccaacccttacaggagacccctgatcgaccaggtggtgcagactgccctc
tcggagacccaggacccggaggaggtgtcggtcacggtcaaggccttcatgacggccgac
ctacccaacgagctcattgagctgctggagaagatcgtcctggacaactctgtgttcagc
gagcaccggaacctgcagaacctgctgatcctgactgccatcaaggcggaccgcacacgc
gtcatggagtacatcaaccgcctggacaactacgacgcccccgacatcgccaacatcgcc
atcagcaacgagctattcgaggaggccttcgccatcttcaagaagtttgacgtcaacacc
tcggctgtgcaggttttgatcgagcacatcgggaacctggaccgggcctacgagtttgcc
gagcgctgcaacgagccgccggtgtggagccagctggccaaggcgcagctgcagaagggg
ctggtgaaggaggccatcgactcttacatcaaggcggacgacccctccgcctacatggag
gtcggccaggcggccgcacagagcggtaactgggaggacctggtgaagttcctccagatg
gctcgtaagaaggcccgagagtcctacgtggagacggagctgatcttcgccctggccaag
accaaccgcctggctgagctggaggagttcatcaacggcccaaacaacgcccacatccag
caggtgggcgaccgttgctacgacgacaagatgtacgacgcggccaagctgctgtacaac
aacgtgtccaacttcggccggctggcctccacgctggtgcacctcggggagttccaggcg
gccgttgacggggcgcgcaaggccaacagcacccgcacctggaaggaggtgtgcttcgcc
tgtgtggatgggaaggagttccggctggcccagatgtgcggtctccacatcgtggtgcac
gctgacgagctggaggagctcatcaactactaccaggaccgtggctacttcgaggagctg
atcaccatgctggaggcggcgctgggcctggagcgagcccacatgggcatgttcaccgag
ctggccatcctctactctaagttcaaaccccagaagatgagggagcacctggagctcttc
tggtcccgggtcaacatcccaaaggtgctgcgggcggcggagcaggcccacctgtgggcg
gagctggtgttcctgtacgacaagtacgaggagtacgacaacgccatcatcaccatgatg
agccacccctccgatgcctggaaggagggccagttcaaagacatcgtcaccaaggtggcc
aacgttgagctgtactacaaagccactcagttctacctggagttcaagcccctgtgcctc
aacgacctgctcattgtgctgtctcccaggctggaccacacgcgcgccgtcaactacttc
agcaaggtcaagcagctgcccttggtgaaaccgtacctgcggtcggtccagaaccacaac
aacaaatctgtgaacgaggcgctgaacaacctcttcatcacagaggaagactatgcagcc
ctgcgcgcatccatcgatgcctacgacaactttgacaacatctcgctggcccaggggctg
gagaagcacgagctgatcgagttcaggaggatcgcggcgtatctcttcaagggcaacaac
cgctggaagcagagcgtggagctgtgcaagaaggacaagctttacaaggatgccatgcag
tacgcgtccgagtcaaaggacacggagctggcggaggagctgctggcctggttcctggag
gaggacaagaaggagtgcttcgccgcctgcctcttcacctgctacgacctgttacggccc
gacgtggtgctggagaccgcctggcgccacaacctcatggacttctccatgccctacttc
atccaagtcatgagggagtacctcagcaaggttgatgcgataaaggaaaaggtcgaccag
ctcgaggcctctgaatctctgaggaaacaggaggagcaggcaaccgaggcccagcccatc
gtctatggcaccccccagctgatgctgacctcggggaacaacgtggccgctcccccccag
cagccctacggttacggctacccggcggcccccggaggctactcccagcccgcacagccc
ggcttcagctacggcatgtga
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