Gadus morhua (Atlantic cod): 115561541
Help
Entry
115561541 CDS
T10832
Symbol
supt6h
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
gmh Gadus morhua (Atlantic cod)
Brite
KEGG Orthology (KO) [BR:
gmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmh03021
]
115561541 (supt6h)
03036 Chromosome and associated proteins [BR:
gmh03036
]
115561541 (supt6h)
Transcription machinery [BR:
gmh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115561541 (supt6h)
Chromosome and associated proteins [BR:
gmh03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
115561541 (supt6h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
Spt6_S1
S1
S1_RRP5
HHH_9
HHH_3
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
115561541
NCBI-ProteinID:
XP_030237538
Ensembl:
ENSGMOG00000018068
LinkDB
All DBs
Position
16:10954027..10980841
Genome browser
AA seq
1769 aa
AA seq
DB search
MSDFIESEADESEDEIFGRSEEPKKPQKHQGTNDDEEEEEENPEDQDEHGNLRGLIDDDV
EKEEEEEEEEGGGGGGGGGGGGGGEGGGGGRGSKRDGEEEDSDSGEEIGHRKRKRSYDDR
LDDDDIDLIEENLGVKVKRQKFRRLRDMSEDEDEEGDEDIRDAHEKDMIADEIFMGGTGM
EEHEPAMDVPLHPGEGEEEEEEESDIDDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQE
IFGGDFDFADFDAEAYDDAEDEEEDGDEESWDRPKKQAKKRAGRRSIFEIYEPSELESSH
MTDQDNEIRSNDMPERFQLRSIPVRPAEDDELEEEAEWIYRNAFSTPTISMQEDTDYLER
GPTTNFSRKGPSMIAKIKEALNFMRNQHFEVPFIAFYRKEYVEPELNINDLWKVWHWDEK
WTQLKTRKQNLKRLFHRMQAFQFELISADPDKPLSDGVRPLDCADIDRLKAVQSCDELSD
VYNHFLLYYGRDIPKMQNASKSKSKKLKKVKEVDEEKEPGAEEEEPEEEEGEQQLKGPEL
KLASRRDMYTICQVAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQFPAEPLELAKDYTC
SQFGTAEAVLDGTRYMVAMQLAREPLVRHVLRQTFQERAKINTKPTKKGKKDVDEAHYGY
SFKYLKNKSVKELTGQQFLLMCQAEDEGLLSISLCIDLLGVKGYGDQTYFEEIKQFYYRD
EFSHQVQEWNRQRTLAIEHALKHFLYPQMAKELKNKLLAEAKENIIKACSRKLYNCLKVA
PYRPDQQAEEEEDDEDLMAEAQAKGIRVLGVAFSASRDSPVFCALVNSDGEMGDFLRLPY
FLKRRNAWKEEERDRKLHDLETLKKFLNNKKPHIIAVAGENRDAQLVIEDFKRTVSELEQ
ESSFPSIAVELVDNELAILYMNSKKSEADFRDYPPLLRQAVSVARKIQDPLVEYSQVCSS
DEDILCLKLHPLQDQVEKEDLLSTLQCEFINRVNEVGVDVNRALAHPYTQSLVQYICGLG
SRKGSHLLKILKQNNTRLENRTQLVTMCHMGPKVFINCAGFIKIDTSSLGDSTDSYIEVL
DGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAFAEELER
QGYGNKGITLYDIRAELSSRYKDLRSAYRSPNTEEIFNLLTKETPETFYIGKLVTSVVTG
IAHRRPQGESYDQAIRNDETGLWQCPFCHQDNFPELSEVWNHFDSGSCPGQAIGVRCRLD
NGVTGFVPTKFLSDKIVKHPEERVKVGMTVHCRIMKIDIEKLSVDLTCRTSDLSDRQNDW
KLPKDTYYDFDTETEDLKTEQEAKMKQQRTTYIKRVIAHPSFHNINFKQAEKMMESMDQG
DLIIRPSSKGENHLTVTWKVAEGIYQHIDVREEGKENAFSLGHTLWINSEEFEDLDEITA
RYVQPMAAFARDLLGHKYFQECGGGDRKKMEEALVKSKKEKPAFIPYYVSACRELPGKFL
LGYQPRGKPRVEFVTITPEGFRYRAQIFPTVNGLFRWFKDHYQEPVPGLTPSSGSRTRTP
ASVNATPANINIADLTRAVSALPPNMTSQMFNAIAAVTGQGQNPNATPAQWGSSQYAYSG
GGSTGGGGGGSSSAYHIFATPAQQPITTPLMTPSYSYATPSQLQSAGTPQYPSSTPQSSH
GGRPSCSTPSSSTSSSRHRTPQSQSKSTSHTAVDWGKMAEQWLQEKEAERKKARPSSRMT
PRPSPSPMIESTPMSVTGDATPLLDETDR
NT seq
5310 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatttcattgaaagtgaagcagatgagtctgaagatgaaatatttggaagatct
gaggagccgaagaaaccgcagaaacaccaagggaccaatgatgatgaggaagaggaggag
gaaaacccagaggatcaggatgagcacgggaacctcagaggtctgattgacgacgacgtc
gagaaagaggaggaggaggaggaagaggaaggaggaggaggaggtggaggaggaggagga
ggaggaggaggagaaggaggaggaggagggcgggggagcaagagggatggggaggaggag
gacagcgactccggcgaggaaattggacatcgaaaaagaaagcgaagttacgacgaccgg
ctggatgatgacgacatcgacctcatcgaggagaacctgggagtcaaagtcaaacggcaa
aagttccgtcgtctccgagacatgtcagaggacgaggacgaggaaggcgacgaggacata
cgggacgcccatgagaaggacatgatcgcagacgagatcttcatgggcgggacgggcatg
gaggagcatgagccagccatggacgtgcccctgcaccctggggagggggaggaggaggag
gaggaggagtcggatatcgacgacttcatcgtggacgacgatggtcagcccttaaagaaa
ccgaagtggaggaaaaagctgcccggatatacggacgcggccctgcaggaggcgcaggag
atcttcgggggggactttgacttcgccgacttcgacgcggaggcctatgacgacgcggaa
gacgaggaggaggacggcgacgaagagtcgtgggaccggcccaagaagcaggccaagaag
cgggcgggccgccgcagcatctttgagatatacgagcccagcgagctggagagcagccac
atgacggaccaggacaacgagatccgctccaacgacatgcccgagcggttccagctacgc
tccatccctgtgcggcctgctgaggatgacgagctggaggaagaggcggagtggatctac
cgcaacgccttctccacccccaccatctccatgcaggaggacacagactatttggagaga
ggccccactactaactttagcagaaagggtcccagcatgatcgcgaagatcaaggaggct
ctgaacttcatgaggaaccagcattttgaggtacccttcatcgccttctacaggaaggag
tacgtggagcccgagctgaacatcaacgacctctggaaggtctggcactgggatgaaaag
tggacccagctgaagacccggaagcagaacctgaaacgcctcttccacaggatgcaggcc
ttccagtttgagttgatctccgctgacccggacaagcccctgtcggacggcgtccgtccc
ctcgactgcgcagacatcgacagattaaaggctgttcagtcgtgtgatgagctgagcgac
gtgtacaaccatttcctgctgtactacggccgggacattcccaaaatgcagaacgcctcc
aagtctaaatccaagaaactgaagaaggtcaaggaagtggatgaagaaaaagaaccgggt
gcagaggaagaggagcctgaggaggaagagggagagcagcagttgaaagggccggagctg
aagctggcctctcgtagagacatgtacaccatctgccaggttgctggactagacggcctg
gccaagaagttcgggttgaccccggagcagtttggggagaaccttcgagacagctaccag
cgccacgagacggagcagttcccggccgagccactagagctcgccaaagactacacgtgc
agtcagttcggtacagctgaggcggtgctggacggaacgcgctacatggtggccatgcag
ctggcccgcgagcccctggtccggcacgtcctgaggcagaccttccaggagagggccaag
atcaacaccaagcccaccaagaagggcaagaaggacgtggacgaggcccactacggctac
tccttcaagtacctgaagaacaagtctgtgaaggagctgaccggccagcagttcctcctc
atgtgtcaggcggaggacgaggggctgctcagcatctccctctgcatcgacctgctgggg
gtcaaggggtacggggaccagacgtactttgaggagatcaagcagttctactaccgggac
gagttcagccaccaggtgcaggagtggaaccggcagcgcacgctggccatcgagcacgcc
ctcaagcacttcctgtacccccagatggccaaggagctgaagaacaagctgctggctgag
gccaaagagaacatcatcaaggcctgcagcaggaagctgtacaactgcctgaaggtggcg
ccgtaccggccggaccagcaggcggaggaggaggaggacgacgaagacctgatggccgag
gcccaggccaagggcatccgggtgctgggcgtggccttctccgccagcagggacagcccc
gtgttctgcgcgctggtgaacagcgacggcgagatgggggacttcctgcggcttccctac
ttcctgaagcggaggaatgcctggaaggaggaggaacgggaccgcaagctccacgatctg
gagacgctgaagaagttcctgaacaacaagaaacctcacatcatcgccgtggccggggaa
aaccgggacgcccagctggtgattgaggactttaagcgcaccgtcagcgagctggagcag
gagtcctccttcccctccatcgccgtggagctggtggacaacgagctggccatcctctac
atgaacagcaagaagtccgaggcggacttccgcgactaccctcccctgctgaggcaggca
gtgtccgtggccaggaaaatccaggaccccctggtggagtactcccaggtctgcagcagt
gacgaggacatcctctgtctcaagctgcaccctctgcaggaccaggtggagaaggaggac
ctgctgagcaccctgcagtgtgagttcatcaaccgggtgaacgaggtgggcgtggacgtg
aaccgggcgctggcccacccctacacccagagcctggtgcagtacatctgtggtctgggc
tccaggaagggctcccatctgctgaagatcctgaagcagaacaacacgcgcctggagaac
cgcacccagctggtcaccatgtgtcacatgggccccaaggtgttcatcaactgcgccggc
ttcattaagattgacacatcgtccctgggggacagtaccgactcctacatcgaggtgctg
gacggctcacgggtccaccccgagacgtacgagtgggcgcgcaagatggcggtggacgcc
ctggagtacgacgagtcggcggaggacgccaacccggccggagccctggaggagatcctg
gagaacccggagcgcctcaaggacctggacctggacgccttcgctgaggagctggagcgc
cagggctacgggaacaagggcataactctgtatgacatccgggctgagctgagctcccgc
tataaagacctgcgctccgcctacaggagccccaacacagaggagatcttcaacctgctc
accaaggagacccctgaaaccttttacatagggaagctggtgaccagcgtggtgacgggc
atcgctcaccgccgcccccagggtgagagctacgaccaggccatccgcaacgacgagacg
ggcctgtggcagtgccccttctgccaccaggacaacttccccgagctcagcgaggtgtgg
aaccacttcgacagcggctcctgtcccggccaggccatcggggtgcgttgtcgccttgac
aacggcgtcaccggcttcgtccccaccaagttcctgagcgacaagatcgtcaagcatccg
gaggaaagagtcaaggtgggcatgacggtgcactgcaggatcatgaagatcgacatcgag
aagctgagcgtggacctgacctgccggacctcggacctgtcggaccgccagaacgactgg
aagctgcccaaggacacctactatgacttcgacacagagacggaggacctgaagacagag
caggaggccaagatgaagcagcagaggaccacgtacatcaagcgcgtgatcgcccacccg
tcgttccacaacatcaacttcaagcaggctgagaagatgatggagtccatggaccagggc
gacctcatcatccggcccagcagcaagggggagaaccacctgaccgtcacctggaaggtg
gccgagggcatctaccagcacatcgacgtgcgggaggagggcaaggagaatgccttcagc
ctgggccacaccctctggatcaacagcgaggagtttgaggatctggatgaaatcacggcc
agatacgttcagccaatggctgccttcgctcgcgacctgctcggccacaaatattttcaa
gaatgtggcggtggagacagaaagaagatggaggaggcgctggtgaagagcaagaaggag
aagcccgcctttatcccctactacgtgtccgcctgccgcgagctgcctgggaagttcctc
ctgggataccagcccaggggcaagccacgagttgagttcgtgaccatcaccccggagggc
ttcaggtaccgagcccagatcttccccaccgtcaacgggctgttccgttggttcaaggac
cactaccaggagcccgtcccagggctcacccccagcagcggcagccgaacccggaccccc
gcctcggtgaacgccacgcccgccaacatcaacatagcggaccttacccgagcggtcagc
gccctcccgcccaacatgacctcccagatgttcaacgccatcgccgcggtgacgggccag
ggccagaaccccaacgccaccccggcgcagtggggctccagccagtacgcctacagcggg
ggcggcagcaccggtgggggcggggggggcagcagcagcgcctaccacatcttcgccacc
ccggcccagcagccaatcacgacgcccctgatgacccccagctactcgtacgccacgccc
agccagctgcagagtgccggcacgccgcagtaccccagcagcacgccccagtcgtcccac
ggagggcggccgtcctgctccacgccctcctcctccacctcctcctcccgccaccggacg
ccccagtcgcagtcaaagtctacctcccacacagcggtggactggggcaagatggcggag
cagtggctgcaggagaaggaggcggagcgcaagaaggcgcgtccgagcagccggatgacc
ccgcggccctcgcccagccccatgatcgagagcacgcccatgtccgtcacgggagacgcc
acgccccttctggacgagaccgatcggtag
DBGET
integrated database retrieval system
