Glutamicibacter mishrai: NMP99_00900
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Entry
NMP99_00900 CDS
T08378
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gmi
Glutamicibacter mishrai
Brite
KEGG Orthology (KO) [BR:
gmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gmi03016
]
NMP99_00900
Enzymes [BR:
gmi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NMP99_00900
Transfer RNA biogenesis [BR:
gmi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NMP99_00900
Prokaryotic type
tRNA splicing ligases
NMP99_00900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
UTT39908
LinkDB
All DBs
Position
193081..194280
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AA seq
399 aa
AA seq
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MNRSAAFPVALTGSGDRVKMWAAEADVENEALEQLRRVAQLPWVHGVRVMPDVHVGKGAT
IGSVIAMNQAVSPSAVGVDIGCGVAAVRTSIRADQLDGLELLRASIEAAIPVGFNAHDEL
PELRRFGLEAGVGQLFGRFETLDEKVQRLKDKAVGQLGTLGGGNHFLELCLDQEDRVWIT
LHSGSRNIGKTLADRHISIAKSLGHNQGLVDNELAVFIEGTPQMDAYKHDLWWAQEYAAA
SRALMLALFKDTVLRHFQALDVQFDAPINVHHNYVNEESIDGQTLLVTRKGAIRAGPGDL
ALIPGSMGTGSYVVRGRGNPRSYFSASHGAGRRMSRTQAKKMYSADDLAQQTMGIECRKD
AGVVDEIPAAYKDIHQVIEAQKDLVEVVGHLRTILCVKG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgttcagcggcgttcccagtagcgctgaccggtagtggcgaccgtgtgaagatg
tgggccgcggaagcggatgtagaaaatgaggcactcgagcagctacgccgtgtagctcag
ctgccatgggtccacggtgtacgagtcatgcccgacgtgcacgtcggcaagggtgcgacc
atcggaagtgtcatcgcgatgaatcaggcggtttcgccttcggcagtgggtgttgacatc
ggctgtggtgtagccgcagtacgtaccagtatccgggcggatcagcttgacggtcttgaa
ctgctgcgtgccagtatcgaagctgcgatccccgtgggctttaatgcccacgacgagctg
cctgagctgcgccgattcggtttggaagccggggtaggccagctcttcggtaggttcgag
actttggatgagaaggtgcaacggctgaaggataaggccgttgggcagctgggaactctg
ggtggaggaaaccacttcttggaactgtgcctcgatcaggaagaccgcgtgtggatcacg
ctacactccggttcacgcaatatcggcaagaccttggccgaccggcacatcagcatcgcg
aagtcgctgggacacaaccagggcctggtcgacaacgagttggcggttttcattgaaggt
acgccgcagatggatgcctacaagcacgatctgtggtgggcgcaggaatacgcggccgca
tccagagccttaatgctcgcgctgttcaaggacaccgtactccggcattttcaggcattg
gacgtccagtttgatgctcccatcaacgttcaccacaactacgtgaacgaggagagcatt
gacggtcagacactgctggtgacccgtaagggtgccattcgtgctggaccgggcgatctt
gcgctcattccgggttccatgggtaccgggtcctacgttgtgcgtggccgtggaaaccca
cggtcgtacttctctgcctcgcacggtgctggacggcggatgagccgcacccaggcaaag
aagatgtactcggccgatgatctggcacagcagaccatgggaattgagtgccgcaaggat
gctggtgttgtggatgaaatccccgcggcttacaaggacattcaccaggtcattgaagcg
cagaaggacctagtggaggtcgtgggccacctacgcaccatcctgtgcgtcaagggatag
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