Glutamicibacter mishrai: NMP99_06590
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Entry
NMP99_06590 CDS
T08378
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
gmi
Glutamicibacter mishrai
Brite
KEGG Orthology (KO) [BR:
gmi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmi03019
]
NMP99_06590 (hrpA)
Enzymes [BR:
gmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NMP99_06590 (hrpA)
Messenger RNA biogenesis [BR:
gmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NMP99_06590 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_19
AAA_22
nSTAND3
ABC_tran
T2SSE
SLFN-g3_helicase
AAA_16
ResIII
PhoH
FtsK_SpoIIIE
TsaE
TrwB_AAD_bind
UvrD-helicase
Myosin_head
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UTT40935
LinkDB
All DBs
Position
complement(1366837..1370760)
Genome browser
AA seq
1307 aa
AA seq
DB search
MALSITYPEALPVSARRADILKAVRENQVVVIAGETGSGKTTQLPKMLIELGLAEKGMIG
HTQPRRLAARTVAERIAEEMGTEIGDEVGFHVRFTGEVSRNTKLKVMTDGILLAEIQRDR
LLKKYSAIIIDEAHERSLNIDFLLGYLKQIMPKRPELKIIITSATIDPERFAAHFGTPLP
DGEVKPAPIIEVSGRTFPVELRYRPLQAEAELDADDENTLEEERDPLDAVTDAVKELSRE
APGDILIFFSGEREIRDAAEALRALVTSNKRMPRYEVLPLFARLSLAEQHRVFHPGGAPR
IILATNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERVSQASANQRSGRCGRV
SEGIAIRLYSEDDFQARPEFTDPEILRTNLASVILQMISMGVVSSAAEVAQFPFVQPPEA
RAITDGVNLLRELGALGSSKAAKITDIGRKLAQLPLDVRLGRMIVESAQRGVAKEVMVLA
AGLSIQDPRERPSEETGQRDRAVELHKRFADEKSDFIALLNLWAYLQEQQKELSSSAFRR
LCKSEFINYLRVREWQDLFTQLRQLAKPLGITVAAAPVDPAANEDAVHISLLAGLLGHIG
LYDERKRDYLGARGTRFAIFPGSGLFKKSPTWVMSAELVETSRLWARVNAAISPEWVEEV
APHLLMRTHSEPHWSKRTGSVMGYEKVTLFGLPIIPRRQFHYWRVDPQLARELFIRHALV
EGDWRTHHKFFAKNRALLEEVEELETRMRRHDLRISDEELFAFYDARVGEQVYSERHFDR
WWKKARATDPALLDFDPDALLAEGGQLDESLFPTTWQLGSIHLPLSYEYNPAASGAEGDG
VSLSVPVVFLNQLDPARFAWLIPGLRHELITALIRSMPKSIRKNFVPAPDVAAKALDMLT
ADFDPTADDLAESLALVLRRLRGMVVDPAVFDFATLPAHLRFGFTVTDASGKVLGQGDDL
AALQHEFAAANRAALASGVNSPGAGKPAAGGKAVPAAKTRKKAEAAGAWDQKGLDSWPQL
PATGETLGDTLPAKVTTTVMGQQITAYPGLNDNGSTVDLTVFRNELERDAAHRSGVIRLL
MLRLPPAAKFVISHLNNAEKLVFTQNPHGSIDKLIADCTMAAVDQLVPERLPMNRAGFEA
LFETVRAEQIDTIFTITAIVAKVFGASTRINKDLKNTKSLAMFAAVTDIRSQLEQLIYPG
FIAATGAANLMRLPRYVQGVEKRLEKLRGGAVTRDSQALLVIQKLEDEYDAALERVPDGA
HVPAALAQVKWMLEEMRISLFAQELGTAYSVSEKRIRKAIKDGLAQL
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagcattacgtatcccgaagccctcccggtctcagcccgtcgcgcggacatc
ctcaaggcagtgcgcgaaaaccaagtggtagtcattgccggtgaaaccggttcgggcaaa
accacccagctgcccaaaatgctcatcgagctcggcctggccgagaagggcatgatcggc
cacacccagccccgccgcctggccgcgcgcaccgtggccgaacgcatcgccgaagaaatg
ggcaccgagatcggcgacgaggtgggcttccatgtgcgcttcaccggcgaggtctcccgc
aataccaagctgaaggtcatgaccgacggcatcctgctggccgaaatccagcgcgaccgc
ctgctgaagaagtattcggcgatcatcatcgacgaggcccacgaacgcagcctgaatatc
gacttcctgctcggatacctcaagcagatcatgcccaagcgccccgagctgaagatcatc
atcacctcggcgaccatcgatcccgaacgcttcgccgcgcatttcggcaccccgcttccc
gacggcgaggtcaagcctgcgccgatcatcgaagtctccgggcgcaccttccctgtggaa
ctgcgctatcgtccgctgcaggccgaagccgagctggatgccgatgatgagaatacgctg
gaagaagagcgcgacccgctggatgcggtcaccgatgcggtcaaggagctttcccgcgag
gcgccgggcgacatcctgatcttcttctccggcgaacgcgaaatccgcgacgctgccgag
gccctgcgcgccctggtcacctcgaacaagcgcatgccccgctatgaggtgctgcccctg
ttcgcccggctttcgctggccgaacagcaccgggttttccaccccggcggtgcgccgcgc
atcatcctggctaccaacgtggccgaaacctcgctgaccgtgccgggcatcaagtacgtg
atcgacaccggcaccgcccgcatctctcgctactcgcatcgcaccaaggtgcagcgcctg
ccgatcgaacgcgtctcccaggccagtgccaaccagcgctcgggccgttgcggccgcgtc
tcagagggcatcgccatccgcctgtactcggaggacgacttccaagcgcgcccggaattc
accgacccggaaatcctgcgcaccaacctggccagcgtcatcttgcagatgatctccatg
ggcgtggtttcctccgcggccgaggtcgcgcagttcccgttcgtccagccgcccgaagcc
agggccatcaccgacggcgtgaacctcttgcgcgaactgggcgccctgggctccagcaag
gccgccaagatcacggacattgggcgcaagctggcccagctgccgctggatgtgcgcctg
ggccggatgatcgtcgagtccgcgcagcgcggcgtcgccaaggaggtcatggtgctggcc
gccgggctgagcatccaggacccgcgcgaacggcccagcgaggaaaccggccaacgtgat
cgcgcggtggaattgcacaagcgcttcgccgacgagaagtccgacttcatcgcgctgctg
aacctctgggcctacctgcaggagcagcaaaaagagctgtcctcctcggccttccgccgg
ttgtgcaagtccgagttcatcaactacctgcgtgtgcgcgaatggcaggatttgttcacc
cagctgcgccagctggccaagcccctgggcatcaccgtagctgccgcgccagtggatccg
gcggccaatgaagatgcggtgcacatttcgctgctggccgggctgctcgggcatatcggc
ctctacgatgagcgcaagcgcgactacctgggcgcgcgcggcacccgcttcgcgatcttc
cccggatcggggctgttcaagaagtccccgacctgggtcatgtccgccgaactggtggaa
acctcgcgcctgtgggcccgggtcaacgcggccatctcgccggaatgggttgaggaagtc
gccccgcacctgctcatgcgcacccactccgaacctcactggtccaagcgcaccggatcg
gtcatgggctatgagaaggtcacgctcttcggcctgccgatcattccgcgccgccaattc
cattattggcgcgtggatccgcagctggcccgagaactgttcatccgccatgccctggtc
gagggcgattggcgcacgcaccacaagttcttcgccaagaaccgggcgctcctcgaagag
gtggaagagcttgaaacccgcatgcgccgccacgatctgcggatcagtgacgaggagctc
ttcgctttctacgacgcccgcgtgggcgagcaggtctactccgagcggcacttcgaccgc
tggtggaagaaggcccgggccaccgacccggcccttctggacttcgatcccgacgccctg
ctggccgagggcgggcagctggatgaaagcctgttcccgaccacctggcagctcggttcc
atccacctgccgctgagctacgaatacaatcctgcggcctccggcgccgagggcgacggc
gtatccttgagcgtgcccgtggtgttcctgaaccagctggatccggcgcgcttcgcctgg
ctgatcccgggcctgcgccacgagctgatcaccgcgctgatccgctccatgcccaagtcg
atccgcaagaacttcgtgccggcccccgatgtggcggccaaggcccttgatatgctcacc
gcggacttcgatccgaccgccgacgatctggccgaatccctggcactggtcctgcgccgg
ttgcgcggcatggtggtcgatcctgcggtcttcgacttcgccacgctgcccgcgcacctg
cgcttcggctttaccgtcaccgatgcttcgggcaaggtgctcggccagggtgatgacctc
gcggccctgcagcatgagttcgccgcggccaaccgggcggcgctggccagcggggtcaac
tcccccggggccggcaagccggctgccggcggcaaggccgtgccggctgccaaaacccgc
aagaaggccgaagccgccggcgcgtgggaccagaaggggctggattcctggccgcagcta
ccggcaaccggcgaaaccctgggcgacaccctgccggccaaggtgaccaccacggtgatg
ggccagcagatcaccgcgtaccctgggctgaacgacaacggctccaccgtggatctgacg
gtcttccgcaacgaattggagcgcgatgccgcgcaccgcagcggcgtgatccgcctgctg
atgctgcgtttgccgccagcggccaagttcgtgatttcgcacctgaacaatgctgagaag
ctggtcttcacccagaacccgcacgggtcgatcgacaagttgatcgccgactgcacgatg
gccgccgtggaccagctggtgcccgagcggctgccgatgaaccgcgccggattcgaggcc
ctgttcgaaaccgtgcgcgccgagcagatcgataccatcttcaccatcacagcgatcgtg
gccaaggtcttcggcgcctccacgcgcatcaacaaggacctgaagaacaccaagtcgctg
gcgatgttcgcagcggtcaccgatatccgctcgcagctggagcagctgatctatccgggc
ttcatcgctgccaccggggccgcgaacctgatgcgcctgccacgctatgtgcaaggtgta
gagaagcgcctggagaagctgcgcggcggggcggtgacccgtgattcgcaggccctgctg
gtgatccagaagttggaggacgagtacgatgccgcactcgaacgggttcctgacggcgcc
cacgtcccggcagcgctggcccaggtgaagtggatgctggaggagatgcgcatctcgctg
ttcgcccaggaactgggcaccgcctattcggtgagcgaaaagcgcatccgcaaggcgatc
aaggacggcctggcgcaactgtag
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