Glutamicibacter mishrai: NMP99_09390
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Entry
NMP99_09390 CDS
T08378
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gmi
Glutamicibacter mishrai
Pathway
gmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMP99_09390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmi03019
]
NMP99_09390
03009 Ribosome biogenesis [BR:
gmi03009
]
NMP99_09390
Enzymes [BR:
gmi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NMP99_09390
Messenger RNA biogenesis [BR:
gmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NMP99_09390
Ribosome biogenesis [BR:
gmi03009
]
Prokaryotic type
rRNA processing factors
NMP99_09390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
UTT41396
LinkDB
All DBs
Position
complement(1981108..1983954)
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AA seq
948 aa
AA seq
DB search
MTLAELNAAAGIEESPYRWRATRRTQVSTPDTTQRASRQAERRAQVARHAASDEAVEQAA
AKTEAAQLGTEEAVNAEAAADDQSVAQAATESVEDHTGQLLAEHGSSMILNPFAVPETAQ
AVLAQVVAKKQEPARQETAEAESDDVTSRRRRRRRRGDVDLELEGGSQDDPPNTVTRVRA
PRGSIESHSSASDKVTSVRGSTRLEAKRQRRRESRETGRRRQVITEAEFLARRESVERKM
IVRQREDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYVGKVQNVLPSMEAAFVDIGRGRN
AVLYAGEVNWDVAALEGQPRRIENALKAGDSVLVQVTKDPVGHKGARLTSQISLPGRYLV
YVPGGSMTGISRKLPDVERQRLKKILKDHLPENAGVIVRTAAEGASEEELTNDINRLRAQ
WEGIEEQANSTKTLAPELLYSEPDLTIKVVRDVFNEDFTKLIVSGEHAWDTIEAYVMYVA
PDLMGRLEKWESEEDIFANYRVDEQIAKALDRKVYLPSGGSLVIDRTEAMTVIDVNTGKF
TGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLG
RDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEECEHCAGAGVITHEEPVESRRTFNSA
GEPHAKKFSEKPSRNSRRRRGGEKDEAKPAAKQEAAPNGEKDEATRNALASIAAASHLEP
HVENAVSIEGEQIPVIKTSTPVAAEVAVTLEALEAALPGKDESDEENGESSRKPRRRSRS
RGRNRSQGEAQQQEAQPAESDQAVQEQQPVAPVADDESKPAEQPRKRSRRASRPQGAGAV
SVQDQPVLTGLAMPASSAPVATEAKAPVEASAAASAVAPQNSTKPKRRSRRATSAQGDAT
AEVLVAEVSAATGSVVQMDASSSQNEKPAEPAGQPVMFGVGVPVRELK
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgactctggccgagctcaatgccgcggccggcattgaagaaagcccataccgctggcga
gccactcgccgcactcaggtttctacgcctgataccacccagcgtgccagccgccaggct
gagcgtcgtgcacaggtggcacgccatgcagccagcgacgaggcggtcgagcaagcagcg
gccaagaccgaagcagcacagctcggcaccgaagaagccgtgaacgcagaagctgcagca
gacgaccagtcggtggcacaagccgccaccgagtccgtagaggaccacaccggccagcta
ttggccgagcacggcagctccatgatcttgaatccattcgccgtgcctgaaaccgcccag
gccgtcttggcacaggttgttgccaaaaagcaggagccagcgcgccaggaaactgccgag
gccgaaagcgatgacgtgacctcacgtcgccgtcgccgccgccgccgcggcgatgtggac
ctggagctcgagggtggttcacaagacgatccgccaaacaccgtaacccgcgtccgcgcg
ccacgtggcagcatcgaaagccacagctccgccagtgacaaggtgacctccgtgcgcgga
tcgactcgccttgaggccaagcgccagcgccgccgtgaatcccgcgagaccggacgccgc
cgccaggtcatcaccgaagccgagttcttggcgcgccgtgaatccgtagagcgcaagatg
atcgtgcgccagcgcgaggaccgcatccagatcggcgtgcttgaagatggggtactcgca
gagcacttcgtttccaagacccagcaggactccctgatcggcaatgtgtatgtcggcaag
gtccagaacgtccttccgtccatggaagctgccttcgtcgatatcggacgcggtcgcaat
gccgtgttgtatgcaggcgaagtcaactgggatgtagcggcccttgaaggccagccgcgt
cgcattgaaaacgcgctgaaggccggcgactcggtgctcgtgcaggtcaccaaggaccct
gtgggacacaagggtgcccgcctgaccagccagatctccctgccgggccgctacctggtc
tacgtgccaggtggttcgatgaccggcatctcgcgcaagctgccagatgtcgagcgccag
cgcctgaagaagatcctgaaggatcacctgccggaaaacgccggcgtcattgtccgcacg
gccgctgaaggcgcctcggaagaagagctgaccaacgacatcaaccgactgcgcgcgcag
tgggaaggtatcgaagagcaggccaactccaccaagaccctggctccggaactgctgtac
tccgagccggatctgaccatcaaggtcgttcgcgatgtcttcaatgaggacttcaccaag
ctgatcgtttccggcgagcacgcatgggacaccatcgaggcctacgtcatgtacgtggca
ccggatctgatgggccgcctggagaagtgggagtccgaagaggatatcttcgccaactac
cgtgttgatgagcagatcgccaaggcgctggaccgcaaggtctacctgccatcgggtggt
tcgctggtcatcgaccgcaccgaagcgatgaccgtcattgacgtgaacaccggcaaattc
accggctcgggcggcaacctcgaagaaaccgtcaccaagaacaacttggaagcggccgag
gaagttgtccgccagctgcgcctgcgtgatatcggcggcattatcgtcatcgacttcatc
gacatggtccttgaatccaaccgcgatctggtactgcgccgcctggtggagtgcctgggc
cgtgaccgcaccaagcaccaggtggccgaagtgacctccctgggcctggtccagatgact
cgcaagcgcatgggcaccggcctgcttgaggtcttcggcgaagagtgcgagcactgcgct
ggcgcgggtgtcatcacccacgaagagccggttgagtcgcgccgcaccttcaactccgct
ggcgaaccccacgccaagaagttcagcgagaagccgagccgcaattcacgccgccgccgc
ggtggcgagaaggacgaggccaagccagctgccaagcaggaggctgcgccgaacggcgag
aaggatgaagctacccgcaatgcgttggcgagcatcgccgccgcatcgcacctggagcca
cacgtggagaacgctgtgagcatcgaaggcgagcagattcctgttatcaagaccagcact
ccggttgccgccgaagtcgccgtaacccttgaagcccttgaagctgccctgccgggcaag
gacgagagcgatgaggagaatggcgagtcgtcgcgcaagccgcgtcgccgctcgcgctcc
cgtggacgcaaccgttcacagggcgaggcgcagcagcaggaagcccagccggcagaatcc
gatcaggccgttcaggagcagcagccagttgcccctgttgcggacgatgagtccaagccc
gctgagcagcctcgcaagcgttcccgccgggcttcacgcccgcagggcgctggtgccgtg
tcggtgcaggaccagccggtgctgaccggtctggctatgccagcgtcgagcgctccggtc
gcgaccgaggccaaggcccctgtcgaagcttcggctgccgctagcgcggtggccccacag
aattccacgaaaccaaagcgacgcagccgtcgagccacctcggctcagggcgacgcgact
gcagaggttctcgtggcagaggtatccgccgctaccggttcggtagttcaaatggatgcc
tccagttcgcaaaacgaaaagccagctgagcctgccgggcaaccggtaatgttcggtgtc
ggcgttccggtgcgcgagctgaaatag
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