Glutamicibacter mishrai: NMP99_12385
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Entry
NMP99_12385 CDS
T08378
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gmi
Glutamicibacter mishrai
Pathway
gmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMP99_12385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmi03019
]
NMP99_12385
03009 Ribosome biogenesis [BR:
gmi03009
]
NMP99_12385
Enzymes [BR:
gmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NMP99_12385
Messenger RNA biogenesis [BR:
gmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NMP99_12385
Ribosome biogenesis [BR:
gmi03009
]
Prokaryotic type
rRNA helicases
NMP99_12385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
UTT41434
LinkDB
All DBs
Position
complement(2594268..2596178)
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AA seq
636 aa
AA seq
DB search
MPVNTDDNQTPEEPTVLFSELGLDARVLAALADLGYEKPSPIQAATIPMLLEGRDVVGLA
QTGTGKTAAFALPALSRMAELADTNGPARTPQILVLAPTRELALQVAEAFTSYAKYLPDF
TVLPVYGGSPYGPQLNGLRRGAQVVVGTPGRVIDHINKGSLDLSNLQYVVLDEADEMLRM
GFAEEVDKILEATPAEKQVALFSATMPRTIRRIASEYLRDPQEVAVKSKQSTGTNITQRY
LQVMGAHKLDAMTRILESEEFDGVITFVRTKMATEDLADKLKARGFTAAAINGDIPQQQR
ERTVENLRSGKIDILVATDVAARGLDVERISHVINFDIPHDTESYVHRIGRTGRAGRSGD
AILFMTPREKYLLRAIEKATRQPVTQMQLPSLDSVNNRRIQKFTDRIDQTISGQDLTTFR
EIVEKFAADHEDLDQLEIAAALALMAQGGRPLLMTEPVVSPSKKARMDRDRPERGDRGDR
GDRGPRARKTAAAGNAMYRLAIGRRNRVQPGSIVGALANEGGFNSSEIGGIEIRSDHTLV
ELPAELSKDQWRALSKTRIGGELISMELDSGRKPRGDDEGDRGGFRGGRGGDRGGFRGGR
GGGFNDRRGGGEKRFGGRGGKDRFSDSGRSGGRRDY
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtaaacaccgacgacaaccagaccccagaagaaccaacggttcttttctccgaa
cttggtctggacgcccgcgtgcttgcagcactggctgacctgggctatgaaaagccatcg
ccaattcaggccgccaccattccaatgcttctcgaaggccgcgacgttgtcggcctggct
cagaccggtaccggtaagaccgccgccttcgcgcttcctgccctgtcccgcatggcagag
ctggctgacaccaatggtccagcccgcaccccacagatcctggttctggctccaacccgc
gagctggctcttcaggttgctgaggctttcacttcctacgccaagtacctgcctgacttc
accgtcttgccagtgtacggtggctcgccatacggcccacagctcaacggcctgcgccgc
ggtgcccaggttgttgttggtaccccaggtcgcgtaatcgaccacatcaacaagggttcc
ctggacctgtccaaccttcagtacgttgtactggatgaggctgacgaaatgctgcgcatg
ggcttcgccgaagaggtcgacaagatcttggaagcaaccccagcagagaagcaggttgcc
ctgttctcggccaccatgccacgcaccatccgccgcatcgcttcggaatacctgcgcgac
ccgcaggaagttgccgtcaagtccaagcagtccaccggcaccaacatcacccagcgctac
ctgcaggttatgggtgcccacaagctggacgccatgacccgcatcctcgaatccgaggaa
ttcgacggcgtcatcaccttcgtacgcaccaagatggctaccgaagacctggctgacaag
ctgaaggcccgtggcttcaccgctgcagccatcaatggcgacatcccgcagcagcagcgt
gaacgcaccgtcgagaacctgcgctcgggcaagatcgacatcctggtcgcaaccgacgtg
gcagctcgtggcttggacgtggagcgcatcagccacgtcatcaacttcgacatcccgcat
gacaccgagtcctacgtgcaccgcatcggacgtaccggtcgtgcaggccgctcgggtgac
gcgatcctgttcatgaccccacgcgaaaagtacctgctgcgtgccatcgaaaaggctacc
cgccagccggtgacccagatgcagctgccttcgctggattcggtcaacaaccgccgtatc
cagaagttcaccgatcgcatcgatcagaccatcagcggccaggacctgaccaccttccgt
gaaatcgtcgagaagttcgccgctgaccacgaagacctggatcagctggaaatcgcagct
gctttggctctgatggctcagggtggccgtccattgctgatgaccgaaccagtggtttcc
ccttcgaagaaggcccgcatggatcgcgaccgcccagagcgcggagaccgcggcgaccgt
ggagatcgcggtcctcgtgcccgcaagactgctgctgcaggcaacgccatgtaccgtctg
gccatcggccgccgcaaccgcgtgcagccaggctcgatcgttggcgctttggctaacgaa
ggcggcttcaactcctcggaaatcggcggcattgaaatccgttcggaccacaccttggtt
gagttgccagcagagctgagcaaggaccagtggcgtgcactgtccaagacccgcatcggc
ggcgagctgatcagcatggagcttgactccggtcgtaagccacgtggcgatgacgaaggc
gaccgcggtggattccgcggtggacgcggcggggaccgtggtggattccgcggtggtcgt
ggcggtggcttcaacgaccgccgtggtggcggcgagaagcgcttcggtggtcgcggtggc
aaggatcgcttcagcgattcgggtcgcagcggtggacgtcgcgactactaa
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