Gemella morbillorum: NCTC11323_00600
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Entry
NCTC11323_00600 CDS
T05494
Symbol
mfd_2
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gmo
Gemella morbillorum
Pathway
gmo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gmo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC11323_00600 (mfd_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gmo03400
]
NCTC11323_00600 (mfd_2)
Enzymes [BR:
gmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11323_00600 (mfd_2)
DNA repair and recombination proteins [BR:
gmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC11323_00600 (mfd_2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
SQH55144
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Position
1:608880..610772
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AA seq
630 aa
AA seq
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MATSKNKVRREIEDISEDLIKLYIKRELSSGYAYSFDSSLQQEFEDDFSFIPTDDQLKAT
EEIKRDMEKQRPMDRLLCGDVGFGKTEVAMRIAFKAVMDAKQVAVLVPTTLLAEQHYENF
VNRFANFPVNIEVVSRFKSAKDITEICKRLREGKIDIIIGTHKLLNDKFKYKDLGLLIID
EEQRFGVKHKEKIKHLKNTIDVLTLSATPIPRTLHMSLIGIRDLSVIETPPSERQPIQTF
VTAQNNMIVKEAIMNEVSRGGQVFYVYNRVDSIDEKYLELKRLLPDINIAYAHGRMTQRE
LERIMSDVIDRKYDLLITTTIIETGIDISNVNTLIVEDADRFGLSQLYQLRGRVGRSSRE
AYAYLMYQPFKALTENSEKRLSAIKNFTTLGSGFKIAMQDLSIRGAGDVLGGRQHGFIDS
VGYTLYSQMLEQEIQMKKGILEPILERDKTQDAEYYENIIKESAPKLQKDLFEAENDDFE
IKLNVDAFIPKEYISSDADKIDFYKRLNSVITDEEIDSIVEDLIDRFSDFGTEVTNLIDI
CYLKVKAKESRVTSVKELANKVIVTFEKGIVNKLKGKELFAALMPHKDVRIIAKDGFFLE
IDKKERYNIRRIRDMINLVKENMEETNDKD
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaagtaaaaataaagttcgtcgtgaaattgaagatatttcggaagacttgatt
aaattgtatataaaacgtgaattaagttcaggttatgcatatagttttgatagtagcttg
caacaagaatttgaagatgacttttcttttatacctaccgatgatcaattaaaagcaact
gaagaaataaaacgtgatatggaaaaacaacgtccaatggacaggctcttatgtggagat
gtaggttttgggaaaactgaagttgccatgcgtattgcgtttaaagcagttatggatgca
aagcaagtagcagttttagtaccaacaacacttttagctgagcaacactatgaaaacttt
gttaatcgttttgcaaactttcctgttaatatagaggtagttagtcgtttcaaaagtgca
aaagatattacagaaatttgcaagagattacgagaagggaaaattgatattattatcgga
acacataaacttcttaatgataaatttaaatataaagatttaggtttattgattattgat
gaagagcaacgcttcggtgttaaacacaaagagaagataaaacacttaaaaaatacgatt
gatgttctgacactaagtgcaacaccaataccaagaacattacatatgagtttgataggt
attcgtgacttgtcagtaatagaaaccccaccaagtgaacgacaaccgattcagactttt
gttaccgcgcaaaataacatgatagttaaagaagcgattatgaatgaagtttctcgtggt
gggcaggtattttatgtttataatagagtagatagcatagatgaaaaatatttggagttg
aaaagattattgccagatataaatatcgcatacgcacatggtagaatgacacaacgtgaa
cttgagcgtattatgtctgatgtaattgatagaaaatatgatttattaattacaactaca
ataatagaaacaggaattgatatttctaatgttaatactcttattgtagaagatgcagat
cgttttggtcttagtcagctataccaacttcgtggacgtgtaggaagaagcagtagagaa
gcttatgcttatttaatgtatcagccattcaaagctcttacagaaaattctgagaaaaga
ttatcagcaattaagaattttacaactttaggaagtggatttaaaattgctatgcaagat
ttatcaattagaggagcgggagatgttcttggtggccgacaacatggatttattgactct
gtagggtatacattatattcacaaatgttagagcaagagattcaaatgaaaaaaggtata
ttagaacctattttggaacgagataaaacacaagatgcagagtattatgaaaatataata
aaagaatccgctccaaaacttcaaaaagatctttttgaagcagaaaatgatgattttgag
attaaattaaatgtagatgcatttattccaaaagaatatattagtagtgatgcagacaaa
atagatttttataagcgattaaatagcgttattactgatgaggaaattgatagtatagta
gaagatttaattgatagattttctgattttggcacagaggttactaatttaattgatatt
tgttacttaaaagttaaagcaaaagagtcgagagttacaagtgttaaagaacttgcaaac
aaagtaattgtaacttttgaaaaaggtatagtaaataaattaaaaggaaaagaattgttt
gctgccttgatgccacataaagatgtgagaattattgctaaagatgggttctttttagaa
atagataaaaaagagcgttacaatattcgtcgtattagagatatgataaatctagtaaaa
gaaaatatggaggaaactaatgacaaagattag
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