Gemella morbillorum: NCTC11323_01153
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Entry
NCTC11323_01153 CDS
T05494
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gmo
Gemella morbillorum
Pathway
gmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11323_01153 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmo03019
]
NCTC11323_01153 (rnr)
03016 Transfer RNA biogenesis [BR:
gmo03016
]
NCTC11323_01153 (rnr)
Enzymes [BR:
gmo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC11323_01153 (rnr)
Messenger RNA biogenesis [BR:
gmo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC11323_01153 (rnr)
Transfer RNA biogenesis [BR:
gmo03016
]
Prokaryotic type
tRNA degradation factors
NCTC11323_01153 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rrp44_S1
SKA1
RhoGAP
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
SQH55676
LinkDB
All DBs
Position
1:complement(1148379..1150505)
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AA seq
708 aa
AA seq
DB search
MSEIILSLFKEHKVLSIEDLKEKLNIESAKDFVELIKHVEKLEQKSTIVQLPNEKFLYVK
EQLGLEGIIRLHQKGFAFVYVESLGIEVYIPKGFTQSAMTGDKVFVKIDSVYKDERNLEG
IVQKILERNTKYTVGTLTNAKFFSFVKSDDKNIEKYIKIINSKNFNLVDGTKVLVEITDY
SKVSFEDHKGIIIKTLGHKDDPGMDILSVIYKHGVPNEFPKEVEEQTNAISDEITMDDSY
RDCTKEMIVTIDGDDAKDLDDAVSVVKTKKGYRLKVFIADVSRYVTEDSPLDKEAANRGC
SVYLADRVVPMLPRKLSNNICSLNPDVLRYTICCDIDFSEKGFPESYDIYPAIIKSKGRL
TYKKVNEVYENVAETVEEYKPYLSMLKTALELSKKIRTNREKRGAIDFDKEESKIIVDSN
GDALDIVLRERGISERLIEDFMLSANEIIGEHFYWMQVPFIYRIHEEPKIEKLRQFFDIS
ASLGYRTKGKVDEISPYILANMLKKFKGEVVEPMLSTILLRTMNQARYSTSNIGHFALST
KYYTHFTSPIRRYPDLLVHRMIRKYLFEGDVSEKTLEHYACKLPELAESSSEYEKRAVDC
EREVDKMKKCEYMLKYQEQSFRGMVSSVTNFGIFITLESKGIEGLVHIKTMNDDYYTYDQ
KNMILIGRRNKKIYRLGDEVIVKVANVDLENQEIDFKILKHKSLIKKK
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaattatcttaagtttattcaaagaacataaagtattaagtattgaagattta
aaagagaagttaaatatagaatcggcaaaagattttgttgaattaattaagcatgtagaa
aaattagaacaaaaatcgactatagtacaactacctaatgaaaaatttctttatgttaaa
gaacaattaggtttagagggaataattagattgcatcaaaaaggttttgcattcgtttat
gtagaaagtttaggaatagaagtttatatccctaaaggctttactcaaagtgctatgact
ggtgataaagtatttgtaaaaattgatagtgtatataaggatgagcgcaatttagaaggt
atagtccaaaagatattagaaagaaatactaagtatactgttggaacgttaaccaatgct
aaatttttctcttttgtaaagagtgatgataaaaatatagagaagtatattaaaataatt
aattctaaaaattttaatttagttgatggaactaaagtattagttgagataacagattat
tctaaagtgagttttgaagatcataaaggaataataataaaaacattggggcataaggat
gaccctggaatggatatactatcagtaatatataagcacggtgttcctaatgaatttccg
aaagaagtagaagaacaaacaaatgctataagcgatgaaataacaatggatgatagctat
cgtgattgtacaaaagaaatgatagttacaatagatggagatgatgcaaaagatttagat
gatgctgtttctgttgtgaaaacaaagaaaggctatagattaaaagtttttatagcagat
gttagtcgctatgtaacagaagatagtccattagataaggaagctgcaaataggggatgt
agtgtatacttggctgatagagttgtgcctatgttaccaaggaaactatctaataatata
tgttcattaaatccagatgtattgcgatatactatttgttgtgatattgatttttcagaa
aaaggcttcccagaaagttatgatatatatccagctataataaaatcaaaaggacgttta
acgtataagaaagttaatgaagtttatgaaaatgttgctgagacagtagaagaatataaa
ccatatttgtctatgttaaagacagcattagagttgtcgaaaaaaattcggaccaatcgt
gaaaaaagaggtgcgattgattttgataaggaagagtcaaaaattattgttgattcaaat
ggagatgctttagatatagttctaagagaaagagggatatcggaaagactaatagaagac
tttatgctaagtgcgaatgaaataataggagaacatttttactggatgcaagtaccattt
atctatcgtattcatgaagagccgaaaatagaaaaactacgccagttttttgatatatca
gctagtttgggatatagaacaaaagggaaggtagatgaaatatctccttatattttagct
aatatgcttaaaaaatttaagggagaggtagttgagcctatgttatcaacaatccttctt
agaacgatgaatcaagctcgctattcaacgtctaatattggacatttcgccttatctact
aaatactatactcatttcacatcaccaataagaagatatccagatttattggttcatagg
atgattagaaaatacttatttgaaggagatgtaagtgaaaaaacactggagcattacgct
tgtaaacttccagagttagcagagagttcatctgaatatgaaaaacgtgctgttgactgt
gagcgcgaagttgataaaatgaaaaagtgtgagtatatgttgaaataccaagaacaaagt
tttagagggatggtttcaagtgtaacaaactttggaatctttataacactggagagtaaa
gggatagaaggtttagttcatattaagacaatgaatgatgattattatacttacgatcaa
aaaaatatgatcttaataggacgtcgaaacaaaaagatttatcgtttgggagatgaggta
atcgtaaaggttgctaatgttgatttagaaaatcaagagattgattttaaaatactaaaa
cataaatcattgataaagaaaaaatag
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